Expand description
Mathematical and statistical tools.
Re-exports§
pub use crate::stats::probs::LogProb;
pub use crate::stats::probs::PHREDProb;
pub use crate::stats::probs::Prob;
Modules§
- Utilities for Bayesian statistics.
- Combinations with and without replacement.
- An implementation of Hidden Markov Models in Rust.
- This module contains the implementation of a classic
PairHMM
as described in Durbin, R., Eddy, S., Krogh, A., & Mitchison, G. (1998). Biological Sequence Analysis. Current Topics in Genome Analysis 2008. http://doi.org/10.1017/CBO9780511790492. It also contains a modified variantHomopolyPairHMM
with additional homopolymer states suited for dealing with homopolymer runs in sequencing as often encountered in Oxford Nanopore sequencing data. - Handling log-probabilities. Log probabilities are an important tool to deal with probabilities in a numerically stable way, in particular when having probabilities close to zero.