lorikeet-rs 0.3.0

Strain resolver for metagenomics
Build #226047 2020-03-01T07:36:38.551614+00:00 
# rustc version
rustc 1.43.0-nightly (d3c79346a 2020-02-29)# docs.rs version
docsrs 0.6.0 (c0dfd78 2020-03-01)# build log
[INFO] running `"docker" "create" "-v" "/home/cratesfyi/workspace/builds/lorikeet-rs-0.3.0/target:/opt/rustwide/target:rw,Z" "-v" "/home/cratesfyi/workspace/builds/lorikeet-rs-0.3.0/source:/opt/rustwide/workdir:ro,Z" "-v" "/home/cratesfyi/workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/home/cratesfyi/workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "MAP_USER_ID=1001" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "RUSTFLAGS=" "-e" "RUSTDOCFLAGS=-Z unstable-options --resource-suffix -20200229-1.43.0-nightly-d3c79346a --static-root-path / --extern-html-root-url linregress=https://docs.rs/linregress/0.1.7 --extern-html-root-url seq_io=https://docs.rs/seq_io/0.3.0 --extern-html-root-url derive_new=https://docs.rs/derive-new/0.5.8 --extern-html-root-url serde_yaml=https://docs.rs/serde_yaml/0.8.11 --extern-html-root-url statrs=https://docs.rs/statrs/0.11.0 --extern-html-root-url nymph=https://docs.rs/nymph/0.1.1 --extern-html-root-url ansi_term=https://docs.rs/ansi_term/0.11.0 --extern-html-root-url assert_cli=https://docs.rs/assert_cli/0.6.3 --extern-html-root-url csv=https://docs.rs/csv/1.1.3 --extern-html-root-url env_logger=https://docs.rs/env_logger/0.6.2 --extern-html-root-url rust_htslib=https://docs.rs/rust-htslib/0.26.1 --extern-html-root-url ndarray_linalg=https://docs.rs/ndarray-linalg/0.12.0 --extern-html-root-url tempfile=https://docs.rs/tempfile/3.0.8 --extern-html-root-url rand=https://docs.rs/rand/0.6.5 --extern-html-root-url bio_types=https://docs.rs/bio-types/0.5.1 --extern-html-root-url serde_derive=https://docs.rs/serde_derive/1.0.104 --extern-html-root-url coverm=https://docs.rs/coverm/0.4.0 --extern-html-root-url strum=https://docs.rs/strum/0.17.1 --extern-html-root-url derive_builder=https://docs.rs/derive_builder/0.9.0 --extern-html-root-url tempdir=https://docs.rs/tempdir/0.3.7 --extern-html-root-url serde_json=https://docs.rs/serde_json/1.0.48 --extern-html-root-url itertools=https://docs.rs/itertools/0.8.2 --extern-html-root-url nix=https://docs.rs/nix/0.13.1 --extern-html-root-url openblas_src=https://docs.rs/openblas-src/0.7.0 --extern-html-root-url ordered_float=https://docs.rs/ordered-float/1.0.2 --extern-html-root-url log=https://docs.rs/log/0.4.8 --extern-html-root-url lazy_static=https://docs.rs/lazy_static/1.4.0 --extern-html-root-url pest=https://docs.rs/pest/2.1.3 --extern-html-root-url pest_derive=https://docs.rs/pest_derive/2.1.0 --extern-html-root-url ndarray=https://docs.rs/ndarray/0.13.0 --extern-html-root-url clap=https://docs.rs/clap/2.33.0 --extern-html-root-url strum_macros=https://docs.rs/strum_macros/0.17.1 --extern-html-root-url approx=https://docs.rs/approx/0.3.2 --extern-html-root-url bio=https://docs.rs/bio/0.30.0 --extern-html-root-url bird_tool_utils=https://docs.rs/bird_tool_utils/0.1.0 --extern-html-root-url rayon=https://docs.rs/rayon/1.2.1 --extern-html-root-url serde=https://docs.rs/serde/1.0.104" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "3221225472" "--network" "none" "rustops/crates-build-env" "/opt/rustwide/cargo-home/bin/cargo" "+nightly" "doc" "--lib" "--no-deps"`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] 5a9a65bbbad5200e400356fe56b31d6b87cac5255f05881ab6da07c6785fa1e5
[INFO] running `"docker" "start" "-a" "5a9a65bbbad5200e400356fe56b31d6b87cac5255f05881ab6da07c6785fa1e5"`
[INFO] [stderr] warning: `panic` setting is ignored for `bench` profile
[INFO] [stderr] warning: `panic` setting is ignored for `test` profile
[INFO] [stderr]    Compiling libc v0.2.67
[INFO] [stderr]    Compiling proc-macro2 v1.0.9
[INFO] [stderr]    Compiling unicode-xid v0.2.0
[INFO] [stderr]    Compiling syn v1.0.16
[INFO] [stderr]    Compiling autocfg v1.0.0
[INFO] [stderr]     Checking cfg-if v0.1.10
[INFO] [stderr]    Compiling serde v1.0.104
[INFO] [stderr]     Checking lazy_static v1.4.0
[INFO] [stderr]     Checking rand_core v0.4.2
[INFO] [stderr]    Compiling memchr v2.3.3
[INFO] [stderr]    Compiling cc v1.0.50
[INFO] [stderr]    Compiling semver-parser v0.7.0
[INFO] [stderr]    Compiling maybe-uninit v2.0.0
[INFO] [stderr]    Compiling autocfg v0.1.7
[INFO] [stderr]    Compiling log v0.4.8
[INFO] [stderr]    Compiling bitflags v1.2.1
[INFO] [stderr]     Checking scopeguard v1.1.0
[INFO] [stderr]     Checking regex-syntax v0.6.14
[INFO] [stderr]    Compiling byteorder v1.3.4
[INFO] [stderr]     Checking quick-error v1.2.3
[INFO] [stderr]     Checking either v1.5.3
[INFO] [stderr]    Compiling rayon-core v1.7.0
[INFO] [stderr]    Compiling glob v0.3.0
[INFO] [stderr]    Compiling version_check v0.1.5
[INFO] [stderr]    Compiling proc-macro2 v0.4.30
[INFO] [stderr]    Compiling pkg-config v0.3.17
[INFO] [stderr]    Compiling ryu v1.0.2
[INFO] [stderr]    Compiling unicode-xid v0.1.0
[INFO] [stderr]    Compiling arrayvec v0.4.12
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]     Checking scopeguard v0.3.3
[INFO] [stderr]     Checking nodrop v0.1.14
[INFO] [stderr]    Compiling syn v0.15.44
[INFO] [stderr]    Compiling unicode-width v0.1.7
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]     Checking rustc-demangle v0.1.16
[INFO] [stderr]    Compiling doc-comment v0.3.1
[INFO] [stderr]    Compiling termcolor v1.1.0
[INFO] [stderr]    Compiling getrandom v0.1.14
[INFO] [stderr]    Compiling ndarray v0.13.0
[INFO] [stderr]    Compiling ansi_term v0.11.0
[INFO] [stderr]    Compiling bindgen v0.51.1
[INFO] [stderr]     Checking itoa v0.4.5
[INFO] [stderr]     Checking stable_deref_trait v1.1.1
[INFO] [stderr]     Checking memoffset v0.2.1
[INFO] [stderr]    Compiling strsim v0.8.0
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]     Checking smallvec v1.2.0
[INFO] [stderr]     Checking crossbeam-utils v0.5.0
[INFO] [stderr]    Compiling unicode-segmentation v1.6.0
[INFO] [stderr]    Compiling fnv v1.0.6
[INFO] [stderr]     Checking blas-src v0.2.1
[INFO] [stderr]    Compiling peeking_take_while v0.1.2
[INFO] [stderr]     Checking bit-vec v0.5.1
[INFO] [stderr]    Compiling libm v0.1.4
[INFO] [stderr]    Compiling rustc-hash v1.1.0
[INFO] [stderr]    Compiling ident_case v1.0.1
[INFO] [stderr]    Compiling typenum v1.11.2
[INFO] [stderr]    Compiling strsim v0.9.3
[INFO] [stderr]     Checking matches v0.1.8
[INFO] [stderr]    Compiling shlex v0.1.1
[INFO] [stderr]     Checking ppv-lite86 v0.2.6
[INFO] [stderr]    Compiling ucd-trie v0.1.2
[INFO] [stderr]    Compiling failure_derive v0.1.6
[INFO] [stderr]     Checking remove_dir_all v0.5.2
[INFO] [stderr]     Checking ordermap v0.3.5
[INFO] [stderr]    Compiling openblas-src v0.7.0
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]    Compiling nix v0.17.0
[INFO] [stderr]     Checking void v1.0.2
[INFO] [stderr]     Checking fixedbitset v0.1.9
[INFO] [stderr]    Compiling bio v0.30.0
[INFO] [stderr]     Checking version-compare v0.0.10
[INFO] [stderr]     Checking percent-encoding v2.1.0
[INFO] [stderr]    Compiling maplit v1.0.2
[INFO] [stderr]    Compiling nix v0.13.1
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]     Checking safemem v0.2.0
[INFO] [stderr]     Checking linked-hash-map v0.5.2
[INFO] [stderr]     Checking lapack-src v0.4.0
[INFO] [stderr]     Checking strum v0.16.0
[INFO] [stderr]     Checking bytecount v0.6.0
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]     Checking blas-src v0.4.0
[INFO] [stderr]    Compiling derive_builder v0.9.0
[INFO] [stderr]     Checking dtoa v0.4.5
[INFO] [stderr]     Checking ansi_term v0.12.1
[INFO] [stderr]     Checking scoped_threadpool v0.1.9
[INFO] [stderr]     Checking strum v0.17.1
[INFO] [stderr]     Checking thread_local v1.0.1
[INFO] [stderr]     Checking crossbeam-utils v0.6.6
[INFO] [stderr]     Checking rand_core v0.3.1
[INFO] [stderr]     Checking rand_jitter v0.1.4
[INFO] [stderr]    Compiling num-traits v0.2.11
[INFO] [stderr]    Compiling crossbeam-utils v0.7.2
[INFO] [stderr]    Compiling crossbeam-epoch v0.8.2
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling num-integer v0.1.42
[INFO] [stderr]    Compiling num-rational v0.2.3
[INFO] [stderr]    Compiling semver v0.9.0
[INFO] [stderr]    Compiling rand_chacha v0.1.1
[INFO] [stderr]    Compiling rand_pcg v0.1.2
[INFO] [stderr]    Compiling rand v0.6.5
[INFO] [stderr]     Checking humantime v1.3.0
[INFO] [stderr]     Checking itertools v0.8.2
[INFO] [stderr]    Compiling nom v4.2.3
[INFO] [stderr]    Compiling backtrace-sys v0.1.32
[INFO] [stderr]    Compiling libloading v0.5.2
[INFO] [stderr]    Compiling bzip2-sys v0.1.8+1.0.8
[INFO] [stderr]    Compiling clang-sys v0.28.1
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]     Checking matrixmultiply v0.2.3
[INFO] [stderr]    Compiling lzma-sys v0.1.15
[INFO] [stderr]    Compiling libz-sys v1.0.25
[INFO] [stderr]    Compiling textwrap v0.11.0
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]     Checking owning_ref v0.4.1
[INFO] [stderr]    Compiling bv v0.11.0
[INFO] [stderr]     Checking unicode-normalization v0.1.12
[INFO] [stderr]     Checking bit-set v0.5.1
[INFO] [stderr]    Compiling heck v0.3.1
[INFO] [stderr]     Checking unicode-bidi v0.3.4
[INFO] [stderr]    Compiling pest v2.1.3
[INFO] [stderr]     Checking c2-chacha v0.2.3
[INFO] [stderr]     Checking petgraph v0.4.13
[INFO] [stderr] error: failed to run custom build command for `openblas-src v0.7.0`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/openblas-src-cef566bab420f37d/build-script-build` (exit code: 101)
[INFO] [stderr] --- stdout
[INFO] [stderr] Running: `"cp" "-R" "source" "source_x86_64-unknown-linux-gnu_tmp"`
[INFO] [stderr] 
[INFO] [stderr] --- stderr
[INFO] [stderr] cp: cannot create directory 'source_x86_64-unknown-linux-gnu_tmp': Read-only file system
[INFO] [stderr] thread 'main' panicked at 'Failed: `"cp" "-R" "source" "source_x86_64-unknown-linux-gnu_tmp"` (exit code: 1)', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/openblas-src-0.7.0/build.rs:68:17
[INFO] [stderr] note: run with `RUST_BACKTRACE=1` environment variable to display a backtrace
[INFO] [stderr] 
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] error: build failed
[INFO] running `"docker" "inspect" "5a9a65bbbad5200e400356fe56b31d6b87cac5255f05881ab6da07c6785fa1e5"`
[INFO] running `"docker" "rm" "-f" "5a9a65bbbad5200e400356fe56b31d6b87cac5255f05881ab6da07c6785fa1e5"`
[INFO] [stdout] 5a9a65bbbad5200e400356fe56b31d6b87cac5255f05881ab6da07c6785fa1e5