rust-htslib 0.48.0

This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.
Documentation
Build #1526255 2024-11-12T15:21:24.005354+00:00
# rustc version
rustc 1.84.0-nightly (81eef2d36 2024-11-11)# docs.rs version
docsrs 0.6.0 (36c721fb 2024-11-06)# build log
[INFO] running `Command { std: "docker" "create" "-v" "/home/cratesfyi/workspace/builds/rust-htslib-0.48.0/target:/opt/rustwide/target:rw,Z" "-v" "/home/cratesfyi/workspace/builds/rust-htslib-0.48.0/source:/opt/rustwide/workdir:ro,Z" "-v" "/home/cratesfyi/workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/home/cratesfyi/workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "DOCS_RS=1" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "6442450944" "--cpus" "6" "--user" "1001:1001" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:4a844ea9eb2546a2d2c7022eacef16ef2e8229c7fbb2c7d4d55a9ceca922f72d" "/opt/rustwide/cargo-home/bin/cargo" "+nightly" "rustdoc" "--lib" "-Zrustdoc-map" "--config" "build.rustdocflags=[\"--cfg\", \"docsrs\", \"-Z\", \"unstable-options\", \"--emit=invocation-specific\", \"--resource-suffix\", \"-20241111-1.84.0-nightly-81eef2d36\", \"--static-root-path\", \"/-/rustdoc.static/\", \"--cap-lints\", \"warn\", \"--extern-html-root-takes-precedence\"]" "--offline" "-Zunstable-options" "--config=doc.extern-map.registries.crates-io=\"https://docs.rs/{pkg_name}/{version}/x86_64-unknown-linux-gnu\"" "-Zrustdoc-scrape-examples" "-j6" "--target" "x86_64-unknown-linux-gnu", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] 34c53dc329211b39c27ff5da64ef90873764ef842e7ffebbdfef7b9eeb8c56dd
[INFO] running `Command { std: "docker" "start" "-a" "34c53dc329211b39c27ff5da64ef90873764ef842e7ffebbdfef7b9eeb8c56dd", kill_on_drop: false }`
[INFO] [stderr] warning: target filter specified, but no targets matched; this is a no-op
[INFO] [stderr]  Documenting rust-htslib v0.48.0 (/opt/rustwide/workdir)
[INFO] [stderr] warning: unnecessary parentheses around function argument
[INFO] [stderr]     --> src/bam/mod.rs:1395:45
[INFO] [stderr]      |
[INFO] [stderr] 1395 |             let rec = htslib::sam_hdr_parse((l_text + 1), text as *const c_char);
[INFO] [stderr]      |                                             ^          ^
[INFO] [stderr]      |
[INFO] [stderr]      = note: `#[warn(unused_parens)]` on by default
[INFO] [stderr] help: remove these parentheses
[INFO] [stderr]      |
[INFO] [stderr] 1395 -             let rec = htslib::sam_hdr_parse((l_text + 1), text as *const c_char);
[INFO] [stderr] 1395 +             let rec = htslib::sam_hdr_parse(l_text + 1, text as *const c_char);
[INFO] [stderr]      |
[INFO] [stderr] 
[INFO] [stderr] warning: unresolved link to `i`
[INFO] [stderr]     --> src/bam/record.rs:1634:38
[INFO] [stderr]      |
[INFO] [stderr] 1634 |     /// Use index based access seq()[i], for checked, safe access.
[INFO] [stderr]      |                                      ^ no item named `i` in scope
[INFO] [stderr]      |
[INFO] [stderr]      = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]`
[INFO] [stderr]      = note: `#[warn(rustdoc::broken_intra_doc_links)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: this URL is not a hyperlink
[INFO] [stderr]     --> src/bam/record.rs:2335:33
[INFO] [stderr]      |
[INFO] [stderr] 2335 |     /// for the first mod.  See https://github.com/samtools/htslib/issues/1635
[INFO] [stderr]      |                                 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]      |
[INFO] [stderr]      = note: bare URLs are not automatically turned into clickable links
[INFO] [stderr]      = note: `#[warn(rustdoc::bare_urls)]` on by default
[INFO] [stderr] help: use an automatic link instead
[INFO] [stderr]      |
[INFO] [stderr] 2335 |     /// for the first mod.  See <https://github.com/samtools/htslib/issues/1635>
[INFO] [stderr]      |                                 +                                              +
[INFO] [stderr] 
[INFO] [stderr] warning: unclosed HTML tag `String`
[INFO] [stderr]    --> src/faidx/mod.rs:166:32
[INFO] [stderr]     |
[INFO] [stderr] 166 |     /// Returns a Result<Vector<String>> for all seq names.
[INFO] [stderr]     |                                ^^^^^^^^
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(rustdoc::invalid_html_tags)]` on by default
[INFO] [stderr] help: try marking as source code
[INFO] [stderr]     |
[INFO] [stderr] 166 |     /// Returns a `Result<Vector<String>>` for all seq names.
[INFO] [stderr]     |                   +                      +
[INFO] [stderr] 
[INFO] [stderr] warning: `rust-htslib` (lib doc) generated 4 warnings (run `cargo fix --lib -p rust-htslib` to apply 2 suggestions)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1.27s
[INFO] [stderr]    Generated /opt/rustwide/target/x86_64-unknown-linux-gnu/doc/rust_htslib/index.html
[INFO] running `Command { std: "docker" "inspect" "34c53dc329211b39c27ff5da64ef90873764ef842e7ffebbdfef7b9eeb8c56dd", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "34c53dc329211b39c27ff5da64ef90873764ef842e7ffebbdfef7b9eeb8c56dd", kill_on_drop: false }`
[INFO] [stdout] 34c53dc329211b39c27ff5da64ef90873764ef842e7ffebbdfef7b9eeb8c56dd