1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45
//! gzip index.
//!
//! A [gzip index] (GZI) is a list of compressed and uncompressed offset pairs for a gzipped file.
//!
//! [gzip index]: http://www.htslib.org/doc/bgzip.html#GZI_FORMAT
#[cfg(feature = "async")]
pub mod r#async;
mod reader;
pub use self::reader::Reader;
#[cfg(feature = "async")]
pub use self::r#async::Reader as AsyncReader;
use std::{
fs::File,
io::{self, BufReader},
path::Path,
};
/// A gzip index.
pub type Index = Vec<(u64, u64)>;
/// Reads the entire contents of a GZ index.
///
/// This is a convenience function and is equivalent to opening the given path and reading the
/// index.
///
/// # Examples
///
/// ```no_run
/// # use std::io;
/// use noodles_bgzf::gzi;
/// let index = gzi::read("in.gz.gzi")?;
/// # Ok::<_, io::Error>(())
/// ```
pub fn read<P>(src: P) -> io::Result<Index>
where
P: AsRef<Path>,
{
let mut reader = File::open(src).map(BufReader::new).map(Reader::new)?;
reader.read_index()
}