1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
use std::{
convert::TryFrom,
io::{self, Read},
vec,
};
use crate::{DataContainer, Record};
use super::Reader;
pub struct Records<'a, R>
where
R: Read,
{
reader: &'a mut Reader<R>,
records: vec::IntoIter<Record>,
}
impl<'a, R> Records<'a, R>
where
R: Read,
{
pub(crate) fn new(reader: &'a mut Reader<R>) -> Records<'_, R> {
Self {
reader,
records: Vec::new().into_iter(),
}
}
fn read_container_records(&mut self) -> io::Result<bool> {
let container = self.reader.read_container()?;
if container.is_eof() {
return Ok(true);
}
let data_container = DataContainer::try_from(container)?;
self.records = data_container
.slices()
.iter()
.map(|slice| {
slice
.records(data_container.compression_header())
.map(|r| slice.resolve_mates(r))
})
.collect::<Result<Vec<_>, _>>()?
.into_iter()
.flatten()
.collect::<Vec<_>>()
.into_iter();
Ok(false)
}
}
impl<'a, R> Iterator for Records<'a, R>
where
R: Read,
{
type Item = io::Result<Record>;
fn next(&mut self) -> Option<Self::Item> {
loop {
match self.records.next() {
Some(r) => return Some(Ok(r)),
None => match self.read_container_records() {
Ok(true) => return None,
Ok(false) => {}
Err(e) => return Some(Err(e)),
},
}
}
}
}