noodles_cram/crai/
async.rs

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//! Async CRAM index I/O.

mod reader;
mod writer;

pub use self::{reader::Reader, writer::Writer};

use std::path::Path;

use tokio::{fs::File, io};

use super::{Index, Record};

/// Reads the entire contents of a CRAM index.
///
/// This is a convenience function and is equivalent to opening the file at the given path and
/// reading the index.
///
/// # Examples
///
/// ```no_run
/// # use std::io;
/// #
/// # #[tokio::main]
/// # async fn main() -> io::Result<()> {
/// use noodles_cram::crai;
/// let index = crai::r#async::read("sample.cram.crai").await?;
/// # Ok(())
/// # }
/// ```
pub async fn read<P>(src: P) -> io::Result<Index>
where
    P: AsRef<Path>,
{
    let mut reader = File::open(src).await.map(Reader::new)?;
    reader.read_index().await
}

/// Writes a CRAM index to a file.
///
/// This is a convenience function and is equivalent to creating a file at the given path and
/// writing the index.
///
/// # Examples
///
/// ```no_run
/// # use std::io;
/// #
/// # #[tokio::main]
/// # async fn main() -> io::Result<()> {
/// use noodles_cram::crai;
/// let index = crai::Index::default();
/// crai::r#async::write("sample.cram.crai", &index).await?;
/// # Ok(())
/// # }
/// ```

pub async fn write<P>(dst: P, index: &[Record]) -> io::Result<()>
where
    P: AsRef<Path>,
{
    let mut writer = File::create(dst).await.map(Writer::new)?;
    writer.write_index(index).await?;
    writer.shutdown().await?;
    Ok(())
}