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use std::ops::Range;
use noodles_bgzf as bgzf;
/// An index reference sequence bin chunk.
///
/// A chunk is a range of virtual positions representing [start, end).
#[derive(Clone, Copy, Debug, Eq, PartialEq)]
pub struct Chunk {
start: bgzf::VirtualPosition,
end: bgzf::VirtualPosition,
}
impl Chunk {
/// Creates a new chunk.
///
/// # Examples
///
/// ```
/// use noodles_bgzf as bgzf;
/// use noodles_csi::binning_index::index::reference_sequence::bin::Chunk;
/// let chunk = Chunk::new(bgzf::VirtualPosition::from(8), bgzf::VirtualPosition::from(13));
/// ```
pub fn new(start: bgzf::VirtualPosition, end: bgzf::VirtualPosition) -> Self {
Self { start, end }
}
/// Returns the chunk start (inclusive) as a virtual position.
///
/// # Examples
///
/// ```
/// use noodles_bgzf as bgzf;
/// use noodles_csi::binning_index::index::reference_sequence::bin::Chunk;
/// let chunk = Chunk::new(bgzf::VirtualPosition::from(8), bgzf::VirtualPosition::from(13));
/// assert_eq!(chunk.start(), bgzf::VirtualPosition::from(8));
/// ```
pub fn start(&self) -> bgzf::VirtualPosition {
self.start
}
/// Returns the chunk end (exclusive) as a virtual position.
///
/// # Examples
///
/// ```
/// use noodles_bgzf as bgzf;
/// use noodles_csi::binning_index::index::reference_sequence::bin::Chunk;
/// let chunk = Chunk::new(bgzf::VirtualPosition::from(8), bgzf::VirtualPosition::from(13));
/// assert_eq!(chunk.end(), bgzf::VirtualPosition::from(13));
/// ```
pub fn end(&self) -> bgzf::VirtualPosition {
self.end
}
}
impl From<Range<bgzf::VirtualPosition>> for Chunk {
fn from(range: Range<bgzf::VirtualPosition>) -> Self {
Self::new(range.start, range.end)
}
}
#[cfg(test)]
mod tests {
use super::*;
#[test]
fn test_from_range_bgzf_virtual_position_for_chunk() {
let start = bgzf::VirtualPosition::from(8);
let end = bgzf::VirtualPosition::from(13);
assert_eq!(Chunk::from(start..end), Chunk::new(start, end));
}
}