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//! FASTA index (FAI) and fields. mod reader; mod record; mod writer; pub use self::{reader::Reader, record::Record, writer::Writer}; use std::{ fs::File, io::{self, BufReader}, path::Path, }; /// A FASTA index. pub type Index = Vec<Record>; /// Reads the entire contents of a FASTA index. /// /// This is a convenience function and is equivalent to opening the file at the given path and /// parsing each record. /// /// # Examples /// /// ```no_run /// # use std::io; /// use noodles_fasta::fai; /// let index = fai::read("reference.fa.fai")?; /// # Ok::<(), io::Error>(()) /// ``` pub fn read<P>(src: P) -> io::Result<Index> where P: AsRef<Path>, { let mut reader = File::open(src).map(BufReader::new).map(Reader::new)?; reader.read_index() }