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use std::io::{self, Write};
use super::Record;
/// A FASTA index writer.
pub struct Writer<W> {
inner: W,
}
impl<W> Writer<W>
where
W: Write,
{
/// Creates a FASTA index writer.
///
/// # Examples
///
/// ```
/// use noodles_fasta::fai;
/// let mut writer = fai::Writer::new(Vec::new());
/// ```
pub fn new(inner: W) -> Self {
Self { inner }
}
/// Returns a reference to the underlying writer.
///
/// # Examples
///
/// ```
/// use noodles_fasta::fai;
/// let mut writer = fai::Writer::new(Vec::new());
/// assert!(writer.get_ref().is_empty());
/// ```
pub fn get_ref(&self) -> &W {
&self.inner
}
/// Writes a FASTA index.
///
/// # Examples
///
/// ```
/// # use std::io;
/// use noodles_fasta::fai;
///
/// let mut writer = fai::Writer::new(Vec::new());
///
/// let index = vec![fai::Record::new("sq0", 13, 5, 80, 81)];
/// writer.write_index(&index)?;
///
/// assert_eq!(writer.get_ref(), b"sq0\t13\t5\t80\t81\n");
/// # Ok::<(), io::Error>(())
pub fn write_index(&mut self, index: &[Record]) -> io::Result<()> {
for record in index {
write_record(&mut self.inner, record)?;
}
Ok(())
}
}
fn write_record<W>(writer: &mut W, record: &Record) -> io::Result<()>
where
W: Write,
{
writer.write_all(record.name())?;
writeln!(
writer,
"\t{length}\t{offset}\t{line_bases}\t{line_width}",
length = record.length(),
offset = record.offset(),
line_bases = record.line_bases(),
line_width = record.line_width(),
)
}