noodles_gff/io/writer.rs
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147
use std::io::{self, Write};
use crate::{Directive, Line, Record};
/// A GFF writer.
pub struct Writer<W> {
inner: W,
}
impl<W> Writer<W> {
/// Returns a reference to the underlying writer.
///
/// # Examples
///
/// ```
/// # use std::io;
/// use noodles_gff as gff;
/// let writer = gff::io::Writer::new(io::sink());
/// let _inner = writer.get_ref();
/// ```
pub fn get_ref(&self) -> &W {
&self.inner
}
/// Returns a mutable reference to the underlying writer.
///
/// # Examples
///
/// ```
/// # use std::io;
/// use noodles_gff as gff;
/// let mut writer = gff::io::Writer::new(io::sink());
/// let _inner = writer.get_mut();
/// ```
pub fn get_mut(&mut self) -> &mut W {
&mut self.inner
}
/// Returns the underlying writer.
///
/// # Examples
///
/// ```
/// # use std::io;
/// use noodles_gff as gff;
/// let writer = gff::io::Writer::new(io::sink());
/// let _inner = writer.into_inner();
/// ```
pub fn into_inner(self) -> W {
self.inner
}
}
impl<W> Writer<W>
where
W: Write,
{
/// Creates a GFF writer.
///
/// # Examples
///
/// ```
/// use noodles_gff as gff;
/// let writer = gff::io::Writer::new(Vec::new());
/// ```
pub fn new(inner: W) -> Self {
Self { inner }
}
/// Writes a [`Line`].
///
/// # Examples
///
/// ```
/// # use std::io;
/// use noodles_gff as gff;
/// use gff::line::Line;
///
/// let mut writer = gff::io::Writer::new(Vec::new());
///
/// let version = Line::Directive(gff::Directive::GffVersion(Default::default()));
/// writer.write_line(&version)?;
///
/// let comment = Line::Comment(String::from("noodles"));
/// writer.write_line(&comment)?;
///
/// let record = Line::Record(gff::Record::default());
/// writer.write_line(&record)?;
///
/// let expected = b"##gff-version 3
/// #noodles
/// .\t.\t.\t1\t1\t.\t.\t.\t.
/// ";
///
/// assert_eq!(&writer.get_ref()[..], &expected[..]);
/// # Ok::<(), io::Error>(())
pub fn write_line(&mut self, line: &Line) -> io::Result<()> {
writeln!(self.inner, "{line}")
}
/// Writes a GFF directive.
///
/// # Examples
///
/// ```
/// # use std::io;
/// use noodles_gff as gff;
///
/// let mut writer = gff::io::Writer::new(Vec::new());
///
/// let version = gff::Directive::GffVersion(Default::default());
/// writer.write_directive(&version)?;
///
/// assert_eq!(writer.get_ref(), b"##gff-version 3\n");
/// # Ok::<(), io::Error>(())
/// ```
pub fn write_directive(&mut self, directive: &Directive) -> io::Result<()> {
writeln!(self.inner, "{directive}")
}
/// Writes a GFF record.
///
/// # Examples
///
/// ```
/// # use std::io;
/// use noodles_gff as gff;
///
/// let mut writer = gff::io::Writer::new(Vec::new());
///
/// let version = gff::Directive::GffVersion(Default::default());
/// writer.write_directive(&version)?;
///
/// let record = gff::Record::default();
/// writer.write_record(&record)?;
///
/// let expected = b"##gff-version 3
/// .\t.\t.\t1\t1\t.\t.\t.\t.
/// ";
///
/// assert_eq!(&writer.get_ref()[..], &expected[..]);
/// # Ok::<(), io::Error>(())
/// ```
pub fn write_record(&mut self, record: &Record) -> io::Result<()> {
writeln!(self.inner, "{record}")
}
}