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mod header;
use tokio::io::{self, AsyncWrite, AsyncWriteExt};
use self::header::write_header;
use crate::{Header, Record};
/// An async SAM writer.
pub struct Writer<W>
where
W: AsyncWrite,
{
inner: W,
}
impl<W> Writer<W>
where
W: AsyncWrite + Unpin,
{
/// Creates an async SAM writer.
///
/// # Examples
///
/// ```
/// use noodles_sam as sam;
/// let writer = sam::r#async::io::Writer::new(Vec::new());
/// ```
pub fn new(inner: W) -> Self {
Self { inner }
}
/// Returns a reference to the underlying writer.
///
/// # Examples
///
/// ```
/// use noodles_sam as sam;
/// let writer = sam::r#async::io::Writer::new(Vec::new());
/// assert!(writer.get_ref().is_empty());
/// ```
pub fn get_ref(&self) -> &W {
&self.inner
}
/// Returns a mutable reference to the underlying writer.
///
/// # Examples
///
/// ```
/// use noodles_sam as sam;
/// let mut writer = sam::r#async::io::Writer::new(Vec::new());
/// assert!(writer.get_mut().is_empty());
/// ```
pub fn get_mut(&mut self) -> &mut W {
&mut self.inner
}
/// Returns the underlying writer.
///
/// # Examples
///
/// ```
/// use noodles_sam as sam;
/// let writer = sam::r#async::io::Writer::new(Vec::new());
/// assert!(writer.into_inner().is_empty());
/// ```
pub fn into_inner(self) -> W {
self.inner
}
/// Writes a SAM header.
///
/// The SAM header is optional, though recommended to include. A call to this method can be
/// omitted if it is empty.
///
/// # Examples
///
/// ```
/// # use std::io;
/// #
/// # #[tokio::main]
/// # async fn main() -> io::Result<()> {
/// use noodles_sam as sam;
///
/// let mut writer = sam::r#async::io::Writer::new(Vec::new());
///
/// let header = sam::Header::builder().add_comment("noodles-sam").build();
/// writer.write_header(&header).await?;
///
/// assert_eq!(writer.get_ref(), b"@CO\tnoodles-sam\n");
/// # Ok(())
/// # }
/// ```
pub async fn write_header(&mut self, header: &Header) -> io::Result<()> {
write_header(&mut self.inner, header).await
}
/// Writes a SAM record.
///
/// # Examples
///
/// ```
/// # use std::io;
/// #
/// # #[tokio::main]
/// # async fn main() -> io::Result<()> {
/// use noodles_sam as sam;
///
/// let mut writer = sam::r#async::io::Writer::new(Vec::new());
///
/// let header = sam::Header::default();
/// let record = sam::Record::default();
/// writer.write_record(&header, &record).await?;
///
/// assert_eq!(writer.get_ref(), b"*\t4\t*\t0\t255\t*\t*\t0\t0\t*\t*\n");
/// # Ok(())
/// # }
/// ```
pub async fn write_record(&mut self, header: &Header, record: &Record) -> io::Result<()> {
self.write_alignment_record(header, record).await
}
/// Writes an alignment record.
///
/// # Examples
///
/// ```
/// # use std::io;
/// #
/// # #[tokio::main]
/// # async fn main() -> io::Result<()> {
/// use noodles_sam::{self as sam, alignment::RecordBuf};
///
/// let mut writer = sam::r#async::io::Writer::new(Vec::new());
///
/// let header = sam::Header::default();
/// let record = RecordBuf::default();
/// writer.write_alignment_record(&header, &record).await?;
///
/// assert_eq!(writer.get_ref(), b"*\t4\t*\t0\t255\t*\t*\t0\t0\t*\t*\n");
/// # Ok(())
/// # }
/// ```
pub async fn write_alignment_record(
&mut self,
header: &Header,
record: &dyn crate::alignment::Record,
) -> io::Result<()> {
use crate::io::writer::write_record;
let mut buf = Vec::new();
write_record(&mut buf, header, record)?;
self.inner.write_all(&buf).await
}
}