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pub mod key;
mod parser;
mod value;
pub use self::{key::Key, value::Value};
use std::{error, fmt, str::FromStr};
pub(crate) const PREFIX: &str = "##";
#[derive(Clone, Debug, Eq, PartialEq)]
pub struct Record {
key: Key,
value: Value,
}
impl Record {
pub fn new(key: Key, value: Value) -> Self {
Self { key, value }
}
pub fn key(&self) -> &Key {
&self.key
}
pub fn value(&self) -> &Value {
&self.value
}
}
#[derive(Clone, Debug, Eq, PartialEq)]
pub enum ParseError {
Invalid,
InvalidKey(key::ParseError),
}
impl error::Error for ParseError {}
impl fmt::Display for ParseError {
fn fmt(&self, f: &mut fmt::Formatter<'_>) -> fmt::Result {
f.write_str("invalid record: ")?;
match self {
Self::Invalid => f.write_str("invalid input"),
Self::InvalidKey(e) => write!(f, "invalid kind: {}", e),
}
}
}
impl FromStr for Record {
type Err = ParseError;
fn from_str(s: &str) -> Result<Self, Self::Err> {
let (_, (raw_key, value)) = parser::parse(s).map_err(|_| ParseError::Invalid)?;
let key = raw_key.parse().map_err(ParseError::InvalidKey)?;
Ok(Self::new(key, value))
}
}
impl From<Record> for (Key, Value) {
fn from(record: Record) -> Self {
(record.key, record.value)
}
}
#[cfg(test)]
mod tests {
use super::*;
#[test]
fn test_from_str() {
let line = "##fileformat=VCFv4.3";
assert_eq!(
line.parse(),
Ok(Record::new(
Key::FileFormat,
Value::String(String::from("VCFv4.3"))
))
);
let line =
r#"##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of samples with data">"#;
assert_eq!(
line.parse(),
Ok(Record::new(
Key::Info,
Value::Struct(vec![
(String::from("ID"), String::from("NS")),
(String::from("Number"), String::from("1")),
(String::from("Type"), String::from("Integer")),
(
String::from("Description"),
String::from("Number of samples with data"),
),
])
))
);
assert!("".parse::<Record>().is_err());
}
}