List of all items

Structs

• AsyncReader
• AsyncWriter
• header::Builder
• header::Header
• header::file_format::FileFormat
• header::parser::Builder
• header::parser::Parser
• header::record::key::other::Other
• header::record::value::map::Builder
• header::record::value::map::Map
• header::record::value::map::alternative_allele::AlternativeAllele
• header::record::value::map::contig::Contig
• header::record::value::map::contig::name::Name
• header::record::value::map::filter::Filter
• header::record::value::map::format::Format
• header::record::value::map::info::Info
• header::record::value::map::other::Other
• indexed_reader::Builder
• indexed_reader::IndexedReader
• lazy::record::Filters
• lazy::record::Genotypes
• lazy::record::Ids
• lazy::record::Info
• lazy::record::Record
• reader::Builder
• reader::Query
• reader::Reader
• reader::Records
• record::Record
• record::alternate_bases::AlternateBases
• record::alternate_bases::allele::symbol::structural_variant::StructuralVariant
• record::builder::Builder
• record::genotypes::Genotypes
• record::genotypes::keys::Keys
• record::genotypes::keys::key::Other
• record::genotypes::sample::Sample
• record::genotypes::sample::value::genotype::Genotype
• record::genotypes::sample::value::genotype::allele::Allele
• record::ids::Ids
• record::ids::id::Id
• record::info::Info
• record::info::field::key::Other
• record::position::Position
• record::quality_score::QualityScore
• record::reference_bases::ReferenceBases
• record::reference_bases::base::TryFromCharError
• writer::Builder
• writer::Writer

Enums

• header::Number
• header::file_format::ParseError
• header::parser::FileFormatOption
• header::parser::ParseError
• header::record::Record
• header::record::key::Key
• header::record::key::Standard
• header::record::key::other::ParseError
• header::record::value::Value
• header::record::value::collection::AddError
• header::record::value::collection::Collection
• header::record::value::map::alternative_allele::ParseError
• header::record::value::map::contig::name::ParseError
• header::record::value::map::format::Type
• header::record::value::map::info::Type
• reader::record::ParseError
• record::EndError
• record::alternate_bases::ParseError
• record::alternate_bases::allele::Allele
• record::alternate_bases::allele::ParseError
• record::alternate_bases::allele::symbol::ParseError
• record::alternate_bases::allele::symbol::Symbol
• record::alternate_bases::allele::symbol::structural_variant::ParseError
• record::alternate_bases::allele::symbol::structural_variant::ty::ParseError
• record::alternate_bases::allele::symbol::structural_variant::ty::Type
• record::builder::BuildError
• record::chromosome::Chromosome
• record::chromosome::ParseError
• record::filters::Filters
• record::filters::ParseError
• record::filters::TryFromIteratorError
• record::genotypes::ParseError
• record::genotypes::keys::ParseError
• record::genotypes::keys::TryFromKeyVectorError
• record::genotypes::keys::key::Key
• record::genotypes::keys::key::ParseError
• record::genotypes::keys::key::Standard
• record::genotypes::sample::GenotypeError
• record::genotypes::sample::ParseError
• record::genotypes::sample::value::Array
• record::genotypes::sample::value::ParseError
• record::genotypes::sample::value::Value
• record::genotypes::sample::value::genotype::ParseError
• record::genotypes::sample::value::genotype::TryFromAllelesError
• record::genotypes::sample::value::genotype::allele::ParseError
• record::genotypes::sample::value::genotype::allele::phasing::ParseError
• record::genotypes::sample::value::genotype::allele::phasing::Phasing
• record::ids::ParseError
• record::ids::id::ParseError
• record::info::ParseError
• record::info::TryFromFieldsError
• record::info::field::ParseError
• record::info::field::key::Key
• record::info::field::key::ParseError
• record::info::field::key::Standard
• record::info::field::value::Array
• record::info::field::value::ParseError
• record::info::field::value::Value
• record::quality_score::ParseError
• record::quality_score::TryFromFloatError
• record::reference_bases::ParseError
• record::reference_bases::TryFromBaseVectorError
• record::reference_bases::base::Base

Traits

• VariantReader
• VariantWriter
• header::record::value::map::Described
• header::record::value::map::Indexed
• header::record::value::map::Inner
• header::record::value::map::Typed

Functions

• header::parser::parse_record

Type Aliases

• header::AlternativeAlleles
• header::Contigs
• header::Filters
• header::Formats
• header::Infos
• header::OtherRecords
• header::SampleNames
• header::record::value::map::alternative_allele::Tag
• header::record::value::map::contig::Tag
• header::record::value::map::filter::Tag
• header::record::value::map::format::Tag
• header::record::value::map::info::Tag
• header::record::value::map::other::Tag
• record::position::ParseError

Constants

• header::record::key::ALTERNATIVE_ALLELE
• header::record::key::CONTIG
• header::record::key::FILE_FORMAT
• header::record::key::FILTER
• header::record::key::FORMAT
• header::record::key::INFO
• record::genotypes::keys::key::ANCESTRAL_HAPLOTYPE_ID
• record::genotypes::keys::key::CONDITIONAL_GENOTYPE_QUALITY
• record::genotypes::keys::key::COPY_NUMBER_CONFIDENCE_INTERVAL
• record::genotypes::keys::key::EXPECTED_ALTERNATE_ALLELE_COUNTS
• record::genotypes::keys::key::FILTER
• record::genotypes::keys::key::FORWARD_STRAND_READ_DEPTHS
• record::genotypes::keys::key::GENOTYPE
• record::genotypes::keys::key::GENOTYPE_COPY_NUMBER
• record::genotypes::keys::key::GENOTYPE_COPY_NUMBER_LIKELIHOODS
• record::genotypes::keys::key::GENOTYPE_COPY_NUMBER_POSTERIOR_PROBABILITIES
• record::genotypes::keys::key::GENOTYPE_COPY_NUMBER_QUALITY
• record::genotypes::keys::key::GENOTYPE_LIKELIHOODS
• record::genotypes::keys::key::GENOTYPE_POSTERIOR_PROBABILITIES
• record::genotypes::keys::key::HAPLOTYPE_ID
• record::genotypes::keys::key::HAPLOTYPE_QUALITY
• record::genotypes::keys::key::MAPPING_QUALITY
• record::genotypes::keys::key::NOVEL_VARIANT_QUALITY_SCORE
• record::genotypes::keys::key::PHASE_SET
• record::genotypes::keys::key::PHASE_SET_LIST
• record::genotypes::keys::key::PHASE_SET_LIST_ORDINALS
• record::genotypes::keys::key::PHASE_SET_LIST_QUALITIES
• record::genotypes::keys::key::PHASING_QUALITY
• record::genotypes::keys::key::READ_DEPTH
• record::genotypes::keys::key::READ_DEPTHS
• record::genotypes::keys::key::REVERSE_STRAND_READ_DEPTHS
• record::genotypes::keys::key::ROUNDED_GENOTYPE_LIKELIHOODS
• record::genotypes::keys::key::ROUNDED_GENOTYPE_POSTERIOR_PROBABILITIES
• record::info::field::key::ADJACENT_COPY_NUMBER
• record::info::field::key::ADJACENT_COPY_NUMBER_CONFIDENCE_INTERVALS
• record::info::field::key::ADJACENT_READ_DEPTHS
• record::info::field::key::ALLELE_COUNT
• record::info::field::key::ALLELE_FREQUENCIES
• record::info::field::key::ANCESTRAL_ALLELE
• record::info::field::key::BASE_QUALITY
• record::info::field::key::BREAKEND_CONFIDENCE_INTERVALS
• record::info::field::key::BREAKEND_COPY_NUMBER
• record::info::field::key::BREAKEND_EVENT_ID
• record::info::field::key::BREAKPOINT_IDS
• record::info::field::key::CIGAR
• record::info::field::key::COPY_NUMBER_CONFIDENCE_INTERVALS
• record::info::field::key::DBV_ID
• record::info::field::key::DB_RIP_ID
• record::info::field::key::DB_VAR_ID
• record::info::field::key::END_CONFIDENCE_INTERVALS
• record::info::field::key::END_POSITION
• record::info::field::key::EVENT_TYPE
• record::info::field::key::FORWARD_STRAND_READ_DEPTHS
• record::info::field::key::IS_IMPRECISE
• record::info::field::key::IS_IN_1000_GENOMES
• record::info::field::key::IS_IN_DB_SNP
• record::info::field::key::IS_IN_HAP_MAP_2
• record::info::field::key::IS_IN_HAP_MAP_3
• record::info::field::key::IS_NOVEL
• record::info::field::key::IS_SOMATIC_MUTATION
• record::info::field::key::IS_VALIDATED
• record::info::field::key::MAPPING_QUALITY
• record::info::field::key::MATE_BREAKEND_IDS
• record::info::field::key::MICROHOMOLOGY_LENGTHS
• record::info::field::key::MICROHOMOLOGY_SEQUENCES
• record::info::field::key::MOBILE_ELEMENT_INFO
• record::info::field::key::MOBILE_ELEMENT_TRANSDUCTION_INFO
• record::info::field::key::PARTNER_BREAKEND_ID
• record::info::field::key::POSITION_CONFIDENCE_INTERVALS
• record::info::field::key::REPEAT_UNIT_BASE_COUNTS
• record::info::field::key::REPEAT_UNIT_COUNTS
• record::info::field::key::REPEAT_UNIT_COUNT_CONFIDENCE_INTERVALS
• record::info::field::key::REPEAT_UNIT_LENGTHS
• record::info::field::key::REPEAT_UNIT_SEQUENCES
• record::info::field::key::REVERSE_STRAND_READ_DEPTHS
• record::info::field::key::SAMPLES_WITH_DATA_COUNT
• record::info::field::key::STRAND_BIAS
• record::info::field::key::SV_CLAIM
• record::info::field::key::SV_LENGTHS
• record::info::field::key::SV_TYPE
• record::info::field::key::TOTAL_ALLELE_COUNT
• record::info::field::key::TOTAL_DEPTH
• record::info::field::key::TOTAL_READ_DEPTHS
• record::info::field::key::TOTAL_REPEAT_SEQUENCE_BASE_COUNTS
• record::info::field::key::TOTAL_REPEAT_SEQUENCE_BASE_COUNT_CONFIDENCE_INTERVALS
• record::info::field::key::TOTAL_REPEAT_SEQUENCE_COUNTS
• record::info::field::key::ZERO_MAPPING_QUALITY_COUNT