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//! VCF record alternate bases and allele.

pub mod allele;

pub use self::allele::Allele;

use std::{
    error, fmt,
    ops::{Deref, DerefMut},
    str::FromStr,
};

const DELIMITER: char = ',';

/// VCF record alternate bases (`ALT`).
#[derive(Clone, Debug, Default, PartialEq, Eq)]
pub struct AlternateBases(Vec<Allele>);

impl Deref for AlternateBases {
    type Target = Vec<Allele>;

    fn deref(&self) -> &Self::Target {
        &self.0
    }
}

impl DerefMut for AlternateBases {
    fn deref_mut(&mut self) -> &mut Self::Target {
        &mut self.0
    }
}

impl fmt::Display for AlternateBases {
    fn fmt(&self, f: &mut fmt::Formatter<'_>) -> fmt::Result {
        for (i, allele) in self.iter().enumerate() {
            if i > 0 {
                f.write_str(",")?;
            }

            write!(f, "{allele}")?;
        }

        Ok(())
    }
}

impl From<Vec<Allele>> for AlternateBases {
    fn from(alleles: Vec<Allele>) -> Self {
        Self(alleles)
    }
}

/// An error returned when raw VCF alternate bases fail to parse.
#[derive(Clone, Debug, Eq, PartialEq)]
pub enum ParseError {
    /// The input is empty.
    Empty,
    /// An allele is invalid.
    InvalidAllele(allele::ParseError),
}

impl error::Error for ParseError {
    fn source(&self) -> Option<&(dyn error::Error + 'static)> {
        match self {
            Self::Empty => None,
            Self::InvalidAllele(e) => Some(e),
        }
    }
}

impl fmt::Display for ParseError {
    fn fmt(&self, f: &mut fmt::Formatter<'_>) -> fmt::Result {
        match self {
            Self::Empty => f.write_str("empty input"),
            Self::InvalidAllele(_) => f.write_str("invalid allele"),
        }
    }
}

impl FromStr for AlternateBases {
    type Err = ParseError;

    fn from_str(s: &str) -> Result<Self, Self::Err> {
        if s.is_empty() {
            return Err(ParseError::Empty);
        }

        s.split(DELIMITER)
            .map(|s| s.parse().map_err(ParseError::InvalidAllele))
            .collect::<Result<_, _>>()
            .map(Self)
    }
}

#[cfg(test)]
mod tests {
    use crate::record::reference_bases::Base;

    use super::*;

    #[test]
    fn test_fmt() {
        let alternate_bases = AlternateBases(vec![Allele::Bases(vec![Base::G])]);
        assert_eq!(alternate_bases.to_string(), "G");

        let alternate_bases = AlternateBases(vec![
            Allele::Bases(vec![Base::G]),
            Allele::Bases(vec![Base::T]),
        ]);
        assert_eq!(alternate_bases.to_string(), "G,T");

        let alternate_bases = AlternateBases::default();
        assert_eq!(alternate_bases.to_string(), "");
    }

    #[test]
    fn test_from_str() {
        assert_eq!(
            "G".parse(),
            Ok(AlternateBases::from(vec![Allele::Bases(vec![Base::G])]))
        );

        assert_eq!(
            "G,T".parse(),
            Ok(AlternateBases::from(vec![
                Allele::Bases(vec![Base::G]),
                Allele::Bases(vec![Base::T]),
            ]))
        );

        assert_eq!("".parse::<AlternateBases>(), Err(ParseError::Empty));

        assert!(matches!(
            ".".parse::<AlternateBases>(),
            Err(ParseError::InvalidAllele(_))
        ));
    }
}