Expand description
Variant record samples key.
Constants§
- ANCESTRAL_
HAPLOTYPE_ ID - Unique identifier of ancestral haplotype (
AHAP). - CONDITIONAL_
GENOTYPE_ QUALITY - Conditional genotype quality (
GQ). - COPY_
NUMBER_ CONFIDENCE_ INTERVAL - Confidence interval around copy number (
CICN). - EXPECTED_
ALTERNATE_ ALLELE_ COUNTS - Expected alternate allele counts (
EC). - FILTER
- Filter indicating if this genotype was “called” (
FT). - FORWARD_
STRAND_ READ_ DEPTHS - Read depth for each allele on the forward strand (
ADF). - GENOTYPE
- Genotype (
GT). - GENOTYPE_
COPY_ NUMBER - Copy number genotype for imprecise events (
CN). - GENOTYPE_
COPY_ NUMBER_ LIKELIHOODS - Copy number genotype likelihood for imprecise events (
CNL). - GENOTYPE_
COPY_ NUMBER_ POSTERIOR_ PROBABILITIES - Copy number posterior probabilities (
CNP). - GENOTYPE_
COPY_ NUMBER_ QUALITY - Copy number genotype quality for imprecise events (
CNQ). - GENOTYPE_
LIKELIHOODS - Genotype likelihoods (
GL). - GENOTYPE_
POSTERIOR_ PROBABILITIES - Genotype posterior probabilities (
GP). - HAPLOTYPE_
ID - Unique haplotype identifier (
HAP). - HAPLOTYPE_
QUALITY - Haplotype quality (
HQ). - LENGTH
- Length of <*> reference block (
LEN). - LOCAL_
ALTERNATIVE_ ALLELE - 1-based indices into ALT, indicating which alleles are relevant (local) for the current sample
(
LAA). - LOCAL_
EXPECTED_ ALTERNATE_ ALLELE_ COUNTS - Local-allele representation of EC (
LEC). - LOCAL_
FORWARD_ STRAND_ READ_ DEPTHS - Local-allele representation of ADF (
LADF). - LOCAL_
GENOTYPE_ LIKELIHOODS - Local-allele representation of GL (
LGL). - LOCAL_
GENOTYPE_ POSTERIOR_ PROBABILITIES - Local-allele representation of GP (
LGP). - LOCAL_
READ_ DEPTHS - Local-allele representation of AD (
LAD). - LOCAL_
REVERSE_ STRAND_ READ_ DEPTHS - Local-allele representation of ADR (
LADR). - LOCAL_
ROUNDED_ GENOTYPE_ LIKELIHOODS - Local-allele representation of PL (
LPL). - LOCAL_
ROUNDED_ GENOTYPE_ POSTERIOR_ PROBABILITIES - Local-allele representation of PP (
LPP). - MAPPING_
QUALITY - RMS mapping quality (
MQ). - NOVEL_
VARIANT_ QUALITY_ SCORE - Phred style probability score that the variant is novel (
NQ). - PHASE_
SET - Phase set (
PS). - PHASE_
SET_ LIST - Phase set list (
PSL). - PHASE_
SET_ LIST_ ORDINALS - Phase set list ordinal (
PSO). - PHASE_
SET_ LIST_ QUALITIES - Phase set list quality (
PSQ). - PHASING_
QUALITY - Phasing quality (
PQ). - READ_
DEPTH - Read depth (
DP). - READ_
DEPTHS - Read depth for each allele (
AD). - RESERVED_
LA - Reserved (
LA). - REVERSE_
STRAND_ READ_ DEPTHS - Read depth for each allele on the reverse strand (
ADR). - ROUNDED_
GENOTYPE_ LIKELIHOODS - Phred-scaled genotype likelihoods rounded to the closest integer (
PL). - ROUNDED_
GENOTYPE_ POSTERIOR_ PROBABILITIES - Phred-scaled genotype posterior probabilities rounded to the closest integer (
PP).