Expand description
VCF record info key.
Constantsยง
- ADJACENT_
COPY_ NUMBER - Copy number of adjacency (
CNADJ). - ADJACENT_
COPY_ NUMBER_ CONFIDENCE_ INTERVALS - Confidence interval around copy number for the adjacency (
CICNADJ). - ADJACENT_
READ_ DEPTHS - Read Depth of adjacency (
DPADJ). - ALLELE_
COUNT - Allele count in genotypes, for each ALT allele, in the same order as listed (
AC). - ALLELE_
FREQUENCIES - Allele frequency for each ALT allele in the same order as listed (
AF). - ANCESTRAL_
ALLELE - Ancestral allele (
AA). - BASE_
QUALITY - RMS base quality (
BQ). - BREAKEND_
CONFIDENCE_ INTERVALS - Confidence interval around the inserted material between breakends (
CILEN). - BREAKEND_
COPY_ NUMBER - Copy number of segment containing breakend (
CN). - BREAKEND_
EVENT_ ID - ID of event associated to breakend (
EVENT). - BREAKPOINT_
IDS - ID of the assembled alternate allele in the assembly file (
BKPTID). - CIGAR
- Cigar string describing how to align an alternate allele to the reference allele (
CIGAR). - COPY_
NUMBER_ CONFIDENCE_ INTERVALS - Confidence interval around copy number for the segment (
CICN). - DBV_ID
- ID of this element in Database of Genomic Variation (
DBVID). - DB_
RIP_ ID - ID of this element in DBRIP (
DBRIPID). - DB_
VAR_ ID - ID of this element in DBVAR (
DBVARID). - END_
CONFIDENCE_ INTERVALS - Confidence interval around END for imprecise variants (
CIEND). - END_
POSITION - End position of the variant described in this record (
END). - EVENT_
TYPE - Type of associated event (
EVENTTYPE). - FORWARD_
STRAND_ READ_ DEPTHS - Read depth for each allele on the forward strand (
ADF). - IS_
IMPRECISE - Imprecise structural variation (
IMPRECISE). - IS_
IN_ 1000_ GENOMES - 1000 Genomes membership (
1000G). - IS_
IN_ DB_ SNP - dbSNP membership (
DB). - IS_
IN_ HAP_ MAP_ 2 - HapMap2 membership (
H2). - IS_
IN_ HAP_ MAP_ 3 - HapMap3 membership (
H3). - IS_
NOVEL - Indicates a novel structural variation (
NOVEL). - IS_
SOMATIC_ MUTATION - Somatic mutation (
SOMATIC). - IS_
VALIDATED - Validated by follow-up experiment (
VALIDATED). - MAPPING_
QUALITY - RMS mapping quality (
MQ). - MATE_
BREAKEND_ IDS - ID of mate breakends (
MATEID). - MICROHOMOLOGY_
LENGTHS - Length of base pair identical micro-homology at event breakpoints (
HOMLEN). - MICROHOMOLOGY_
SEQUENCES - Sequence of base pair identical micro-homology at event breakpoints (
HOMSEQ). - MOBILE_
ELEMENT_ INFO - Mobile element info of the form NAME,START,END,POLARITY (
MEINFO). - MOBILE_
ELEMENT_ TRANSDUCTION_ INFO - Mobile element transduction info of the form CHR,START,END,POLARITY (
METRANS). - PARTNER_
BREAKEND_ ID - ID of partner breakend (
PARID). - POSITION_
CONFIDENCE_ INTERVALS - Confidence interval around POS for imprecise variants (
CIPOS). - REPEAT_
UNIT_ BASE_ COUNTS - Number of bases in each individual repeat unit (
RUB). - REPEAT_
UNIT_ COUNTS - Repeat unit count of corresponding repeat sequence (
RUC). - REPEAT_
UNIT_ COUNT_ CONFIDENCE_ INTERVALS - Confidence interval around RUC (
CIRUC). - REPEAT_
UNIT_ LENGTHS - Repeat unit length of the corresponding repeat sequence (
RUL). - REPEAT_
UNIT_ SEQUENCES - Repeat unit sequence of the corresponding repeat sequence (
RUS). - REVERSE_
STRAND_ READ_ DEPTHS - Read depth for each allele on the reverse strand (
ADR). - SAMPLES_
WITH_ DATA_ COUNT - Number of samples with data (
NS). - STRAND_
BIAS - Strand bias (
SB). - SV_
CLAIM - Claim made by the structural variant call (
SVCLAIM). - SV_
LENGTHS - Difference in length between REF and ALT alleles (
SVLEN). - SV_TYPE
- Type of structural variant (
SVTYPE). - TOTAL_
ALLELE_ COUNT - Total number of alleles in called genotypes (
AN). - TOTAL_
DEPTH - Combined depth across samples (
DP). - TOTAL_
READ_ DEPTHS - Total read depth for each allele (
AD). - TOTAL_
REPEAT_ SEQUENCE_ BASE_ COUNTS - Total number of bases in the corresponding repeat sequence (
RB). - TOTAL_
REPEAT_ SEQUENCE_ BASE_ COUNT_ CONFIDENCE_ INTERVALS - Confidence interval around RB (
CIRB). - TOTAL_
REPEAT_ SEQUENCE_ COUNTS - Total number of repeat sequences in this allele (
RN). - ZERO_
MAPPING_ QUALITY_ COUNT - Number of MAPQ == 0 reads (
MQ0).