Module pairing

This module contains bitmask constants for SyncedReader.

Constants

• ANY
  Any combination of alleles can be returned by bcf_sr_next_line().
• BOTH
  SNPS | INDELS.
• BOTH_REF
  SNPS | INDELS | SNP_REF | INDEL_REF.
• EXACT
  Require the exact same set of alleles in all files.
• INDELS
  The same as above, but with indels.
• INDEL_REF
  Allow REF-only records with indels.
• SNPS
  Allow different alleles, as long as they all are SNPs.
• SNP_REF
  Allow REF-only records with SNPs.
• SOME
  At least some of multiallelic ALTs must match. Implied by all the others with the exception of EXACT.