Expand description
This module contains bitmask constants for SyncedReader.
Constantsยง
- ANY
- Any combination of alleles can be returned by
bcf_sr_next_line(). - BOTH
SNPS | INDELS.- BOTH_
REF SNPS | INDELS | SNP_REF | INDEL_REF.- EXACT
- Require the exact same set of alleles in all files.
- INDELS
- The same as above, but with indels.
- INDEL_
REF - Allow REF-only records with indels.
- SNPS
- Allow different alleles, as long as they all are SNPs.
- SNP_REF
- Allow REF-only records with SNPs.
- SOME
- At least some of multiallelic ALTs must match. Implied by all the others with the exception of
EXACT.