Module bam

Module for working with SAM, BAM, and CRAM files.

Re-exports

• pub use crate::bam::buffer::RecordBuffer;
• pub use crate::bam::header::Header;
• pub use crate::bam::record::Record;

Modules

• buffer
• ext
  Extensions for BAM records beyond htslib
• header
• index
  Module for working with BAM or CRAM indices.
• pileup
• record

Structs

• ChunkIterator
  Iterator over the records of a BAM until the virtual offset is less than end
• HeaderView
• IndexView
• IndexedReader
• RcRecords
  Iterator over the records of a BAM, using an Rc.
• Reader
  A BAM reader.
• Records
  Iterator over the records of a BAM.
• Writer
  A BAM writer.

Enums

• CompressionLevel
  Compression levels in BAM/CRAM files
• FetchDefinition
  Enum for IndexdReader.fetch() arguments.
• Format

Traits

• Read
  A trait for a BAM reader with a read method.

Functions

• set_fai_filename^⚠
  Safety