Module io

Structs

• FastIterator
  Iterator over a fastq.gz file, yielding [FastEntry]
• FastqEntry
  A single FastQ entry, with header, sequence and quality scores
• PhredCache
  Caches the Phred symbol to probability translation table TODO: could be done using lazy_static

Statics

• PHRED_LOOKUP

Functions

• fastq_list_iter
  Chaining many fastq files into a single iterator
• fastq_phred_iter
  Chaining many fastq files into a single iterator
• parse_whitelist_gz
  Loading 10x CB whilelist from file Returns a HashSet of CBs
• quality_filter
  Filters a fastq-file for all reads having an aggregated PhredScore of > threshold_qc
• read_filter_whitelist
• reverse_complement