hgvs 0.17.3

Port of biocommons/hgvs to Rust
Documentation
Build #1382896 2024-10-07T12:15:04.374696+00:00
# rustc version
rustc 1.83.0-nightly (55a22d2a6 2024-10-06)# docs.rs version
docsrs 0.6.0 (d5a37845 2024-09-24)# build log
[INFO] running `Command { std: "docker" "create" "-v" "/home/cratesfyi/workspace/builds/hgvs-0.17.3/target:/opt/rustwide/target:rw,Z" "-v" "/home/cratesfyi/workspace/builds/hgvs-0.17.3/source:/opt/rustwide/workdir:ro,Z" "-v" "/home/cratesfyi/workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/home/cratesfyi/workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "DOCS_RS=1" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "6442450944" "--cpus" "6" "--user" "1001:1001" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:6252d7ea7fb8caaf7af6d800c5fb250a9cd862b9a7f9508afb3c54fa7fe1102e" "/opt/rustwide/cargo-home/bin/cargo" "+nightly" "rustdoc" "--lib" "-Zrustdoc-map" "--config" "build.rustdocflags=[\"--cfg\", \"docsrs\", \"-Z\", \"unstable-options\", \"--emit=invocation-specific\", \"--resource-suffix\", \"-20241006-1.83.0-nightly-55a22d2a6\", \"--static-root-path\", \"/-/rustdoc.static/\", \"--cap-lints\", \"warn\", \"--extern-html-root-takes-precedence\"]" "--offline" "-Zunstable-options" "--config=doc.extern-map.registries.crates-io=\"https://docs.rs/{pkg_name}/{version}/i686-unknown-linux-gnu\"" "-Zrustdoc-scrape-examples" "-j6" "--target" "i686-unknown-linux-gnu", kill_on_drop: false }`
[INFO] [stdout] 71c0d841dea381f013c3fe1bb20961f7111d51a41ad32c6645f00a051e192efd
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "71c0d841dea381f013c3fe1bb20961f7111d51a41ad32c6645f00a051e192efd", kill_on_drop: false }`
[INFO] [stderr] warning: target filter specified, but no targets matched; this is a no-op
[INFO] [stderr]  Documenting hgvs v0.17.3 (/opt/rustwide/workdir)
[INFO] [stderr] warning: this URL is not a hyperlink
[INFO] [stderr]  --> src/data/cdot/json.rs:3:5
[INFO] [stderr]   |
[INFO] [stderr] 3 | //! https://github.com/SACGF/cdot
[INFO] [stderr]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: bare URLs are not automatically turned into clickable links
[INFO] [stderr]   = note: `#[warn(rustdoc::bare_urls)]` on by default
[INFO] [stderr] help: use an automatic link instead
[INFO] [stderr]   |
[INFO] [stderr] 3 | //! <https://github.com/SACGF/cdot>
[INFO] [stderr]   |     +                             +
[INFO] [stderr] 
[INFO] [stderr] warning: Rust code block is empty
[INFO] [stderr]    --> src/data/cdot/json.rs:486:9
[INFO] [stderr]     |
[INFO] [stderr] 486 |       /// ```
[INFO] [stderr]     |  _________^
[INFO] [stderr] 487 | |     // gap = 'M196 I1 M61 I1 M181'
[INFO] [stderr] 488 | |     // CIGAR = '194=1D60=1D184='
[INFO] [stderr] 489 | |     /// ```
[INFO] [stderr]     | |___________^
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(rustdoc::invalid_rust_codeblocks)]` on by default
[INFO] [stderr] help: mark blocks that do not contain Rust code as text
[INFO] [stderr]     |
[INFO] [stderr] 486 |     /// ```text
[INFO] [stderr]     |            ++++
[INFO] [stderr] 
[INFO] [stderr] warning: this URL is not a hyperlink
[INFO] [stderr]  --> src/data/uta.rs:3:10
[INFO] [stderr]   |
[INFO] [stderr] 3 | //! C.f. https://github.com/biocommons/uta
[INFO] [stderr]   |          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: bare URLs are not automatically turned into clickable links
[INFO] [stderr] help: use an automatic link instead
[INFO] [stderr]   |
[INFO] [stderr] 3 | //! C.f. <https://github.com/biocommons/uta>
[INFO] [stderr]   |          +                                 +
[INFO] [stderr] 
[INFO] [stderr] warning: this URL is not a hyperlink
[INFO] [stderr]  --> src/data/uta_sr.rs:3:7
[INFO] [stderr]   |
[INFO] [stderr] 3 | //! * https://github.com/biocommons/uta
[INFO] [stderr]   |       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: bare URLs are not automatically turned into clickable links
[INFO] [stderr] help: use an automatic link instead
[INFO] [stderr]   |
[INFO] [stderr] 3 | //! * <https://github.com/biocommons/uta>
[INFO] [stderr]   |       +                                 +
[INFO] [stderr] 
[INFO] [stderr] warning: this URL is not a hyperlink
[INFO] [stderr]  --> src/data/uta_sr.rs:4:7
[INFO] [stderr]   |
[INFO] [stderr] 4 | //! * https://github.com/biocommons/biocommons.seqrepo
[INFO] [stderr]   |       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: bare URLs are not automatically turned into clickable links
[INFO] [stderr] help: use an automatic link instead
[INFO] [stderr]   |
[INFO] [stderr] 4 | //! * <https://github.com/biocommons/biocommons.seqrepo>
[INFO] [stderr]   |       +                                                +
[INFO] [stderr] 
[INFO] [stderr] warning: this URL is not a hyperlink
[INFO] [stderr]  --> src/data/uta_sr.rs:5:7
[INFO] [stderr]   |
[INFO] [stderr] 5 | //! * https://github.com/varfish-org/seqrepo-rs
[INFO] [stderr]   |       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: bare URLs are not automatically turned into clickable links
[INFO] [stderr] help: use an automatic link instead
[INFO] [stderr]   |
[INFO] [stderr] 5 | //! * <https://github.com/varfish-org/seqrepo-rs>
[INFO] [stderr]   |       +                                         +
[INFO] [stderr] 
[INFO] [stderr] warning: `hgvs` (lib doc) generated 6 warnings (run `cargo fix --lib -p hgvs` to apply 6 suggestions)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1.68s
[INFO] [stderr]    Generated /opt/rustwide/target/i686-unknown-linux-gnu/doc/hgvs/index.html
[INFO] running `Command { std: "docker" "inspect" "71c0d841dea381f013c3fe1bb20961f7111d51a41ad32c6645f00a051e192efd", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "71c0d841dea381f013c3fe1bb20961f7111d51a41ad32c6645f00a051e192efd", kill_on_drop: false }`
[INFO] [stdout] 71c0d841dea381f013c3fe1bb20961f7111d51a41ad32c6645f00a051e192efd