noodles-cram 0.64.0

CRAM format reader and writer
Documentation
Build #1236677 2024-05-31T18:36:47.878120+00:00
# rustc version
rustc 1.80.0-nightly (6f3df08aa 2024-05-30)# docs.rs version
docsrs 0.6.0 (2d4f32bd 2024-05-19)# build log
[INFO] running `Command { std: "docker" "create" "-v" "/home/cratesfyi/workspace/builds/noodles-cram-0.64.0/target:/opt/rustwide/target:rw,Z" "-v" "/home/cratesfyi/workspace/builds/noodles-cram-0.64.0/source:/opt/rustwide/workdir:ro,Z" "-v" "/home/cratesfyi/workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/home/cratesfyi/workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "DOCS_RS=1" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "6442450944" "--cpus" "6" "--user" "1001:1001" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:dff56e7819e73ed36160586b3445e93eb0be776c16704aeeded9c3fb668b2384" "/opt/rustwide/cargo-home/bin/cargo" "+nightly" "rustdoc" "--lib" "-Zrustdoc-map" "--features" "async" "--config" "build.rustdocflags=[\"--cfg\", \"docsrs\", \"-Z\", \"unstable-options\", \"--emit=invocation-specific\", \"--resource-suffix\", \"-20240530-1.80.0-nightly-6f3df08aa\", \"--static-root-path\", \"/-/rustdoc.static/\", \"--cap-lints\", \"warn\", \"--extern-html-root-takes-precedence\"]" "--offline" "-Zunstable-options" "--config=doc.extern-map.registries.crates-io=\"https://docs.rs/{pkg_name}/{version}/x86_64-apple-darwin\"" "-Zrustdoc-scrape-examples" "-j6" "--target" "x86_64-apple-darwin", kill_on_drop: false }`
[INFO] [stdout] a5d8195f02b070cc0fa07f1315344c0ff977c45353ab81bd6325c163294b8b22
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "a5d8195f02b070cc0fa07f1315344c0ff977c45353ab81bd6325c163294b8b22", kill_on_drop: false }`
[INFO] [stderr] warning: Rustdoc did not scrape the following examples because they require dev-dependencies: cram_count_async, cram_query_async, cram_read_header_async, cram_view_async, cram_write_async, cram_query, cram_count, cram_read_header, cram_index, cram_view, cram_write
[INFO] [stderr]     If you want Rustdoc to scrape these examples, then add `doc-scrape-examples = true`
[INFO] [stderr]     to the [[example]] target configuration of at least one example.
[INFO] [stderr] warning: target filter specified, but no targets matched; this is a no-op
[INFO] [stderr]     Checking indexmap v2.2.6
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]     Checking slab v0.4.9
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]     Checking lexical-core v0.8.5
[INFO] [stderr]     Checking crypto-common v0.1.6
[INFO] [stderr] The following warnings were emitted during compilation:
[INFO] [stderr] 
[INFO] [stderr] warning: bzip2-sys@0.1.11+1.0.8: cc: error: unrecognized command-line option '-arch'
[INFO] [stderr] warning: bzip2-sys@0.1.11+1.0.8: cc: error: unrecognized command-line option '-mmacosx-version-min=10.7'
[INFO] [stderr] 
[INFO] [stderr] error: failed to run custom build command for `bzip2-sys v0.1.11+1.0.8`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/bzip2-sys-478ecde5ab1a1aac/build-script-build` (exit status: 1)
[INFO] [stderr]   --- stdout
[INFO] [stderr]   cargo:rerun-if-env-changed=BZIP2_NO_PKG_CONFIG
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_ALLOW_CROSS_x86_64-apple-darwin
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_ALLOW_CROSS_x86_64_apple_darwin
[INFO] [stderr]   cargo:rerun-if-env-changed=TARGET_PKG_CONFIG_ALLOW_CROSS
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_ALLOW_CROSS
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_x86_64-apple-darwin
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_x86_64_apple_darwin
[INFO] [stderr]   cargo:rerun-if-env-changed=TARGET_PKG_CONFIG
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-apple-darwin
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_apple_darwin
[INFO] [stderr]   cargo:rerun-if-env-changed=TARGET_PKG_CONFIG_SYSROOT_DIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR
[INFO] [stderr]   TARGET = Some("x86_64-apple-darwin")
[INFO] [stderr]   OPT_LEVEL = Some("0")
[INFO] [stderr]   HOST = Some("x86_64-unknown-linux-gnu")
[INFO] [stderr]   cargo:rerun-if-env-changed=CC_x86_64-apple-darwin
[INFO] [stderr]   CC_x86_64-apple-darwin = None
[INFO] [stderr]   cargo:rerun-if-env-changed=CC_x86_64_apple_darwin
[INFO] [stderr]   CC_x86_64_apple_darwin = None
[INFO] [stderr]   cargo:rerun-if-env-changed=TARGET_CC
[INFO] [stderr]   TARGET_CC = None
[INFO] [stderr]   cargo:rerun-if-env-changed=CC
[INFO] [stderr]   CC = None
[INFO] [stderr]   RUSTC_LINKER = None
[INFO] [stderr]   cargo:rerun-if-env-changed=CROSS_COMPILE
[INFO] [stderr]   CROSS_COMPILE = None
[INFO] [stderr]   cargo:rerun-if-env-changed=CC_ENABLE_DEBUG_OUTPUT
[INFO] [stderr]   cargo:rerun-if-env-changed=CRATE_CC_NO_DEFAULTS
[INFO] [stderr]   CRATE_CC_NO_DEFAULTS = None
[INFO] [stderr]   DEBUG = Some("true")
[INFO] [stderr]   CARGO_CFG_TARGET_FEATURE = Some("cmpxchg16b,fxsr,lahfsahf,sse,sse2,sse3,sse4.1,ssse3")
[INFO] [stderr]   cargo:rerun-if-env-changed=CFLAGS_x86_64-apple-darwin
[INFO] [stderr]   CFLAGS_x86_64-apple-darwin = None
[INFO] [stderr]   cargo:rerun-if-env-changed=CFLAGS_x86_64_apple_darwin
[INFO] [stderr]   CFLAGS_x86_64_apple_darwin = None
[INFO] [stderr]   cargo:rerun-if-env-changed=TARGET_CFLAGS
[INFO] [stderr]   TARGET_CFLAGS = None
[INFO] [stderr]   cargo:rerun-if-env-changed=CFLAGS
[INFO] [stderr]   CFLAGS = None
[INFO] [stderr]   cargo:warning=cc: error: unrecognized command-line option '-arch'
[INFO] [stderr]   cargo:warning=cc: error: unrecognized command-line option '-mmacosx-version-min=10.7'
[INFO] [stderr] 
[INFO] [stderr]   --- stderr
[INFO] [stderr] 
[INFO] [stderr] 
[INFO] [stderr]   error occurred: Command "cc" "-O0" "-ffunction-sections" "-fdata-sections" "-fPIC" "-gdwarf-2" "-fno-omit-frame-pointer" "-m64" "-arch" "x86_64" "-mmacosx-version-min=10.7" "-I" "bzip2-1.0.8" "-D_FILE_OFFSET_BITS=64" "-DBZ_NO_STDIO" "-o" "/opt/rustwide/target/x86_64-apple-darwin/debug/build/bzip2-sys-043f834f49d7bf9b/out/lib/5bb993572ce83733-blocksort.o" "-c" "bzip2-1.0.8/blocksort.c" with args cc did not execute successfully (status code exit status: 1).
[INFO] [stderr] 
[INFO] [stderr] 
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] The following warnings were emitted during compilation:
[INFO] [stderr] 
[INFO] [stderr] warning: lzma-sys@0.1.20: cc: error: unrecognized command-line option '-arch'
[INFO] [stderr] warning: lzma-sys@0.1.20: cc: error: unrecognized command-line option '-mmacosx-version-min=10.7'
[INFO] [stderr] 
[INFO] [stderr] error: failed to run custom build command for `lzma-sys v0.1.20`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/lzma-sys-1f4a43c7130132d3/build-script-build` (exit status: 1)
[INFO] [stderr]   --- stdout
[INFO] [stderr]   cargo:rerun-if-changed=build.rs
[INFO] [stderr]   cargo:rerun-if-env-changed=LZMA_API_STATIC
[INFO] [stderr]   cargo:rerun-if-env-changed=LIBLZMA_NO_PKG_CONFIG
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_ALLOW_CROSS_x86_64-apple-darwin
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_ALLOW_CROSS_x86_64_apple_darwin
[INFO] [stderr]   cargo:rerun-if-env-changed=TARGET_PKG_CONFIG_ALLOW_CROSS
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_ALLOW_CROSS
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_x86_64-apple-darwin
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_x86_64_apple_darwin
[INFO] [stderr]   cargo:rerun-if-env-changed=TARGET_PKG_CONFIG
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-apple-darwin
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_apple_darwin
[INFO] [stderr]   cargo:rerun-if-env-changed=TARGET_PKG_CONFIG_SYSROOT_DIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR
[INFO] [stderr]   cargo:root=/opt/rustwide/target/x86_64-apple-darwin/debug/build/lzma-sys-7d6a004f2ae610b2/out
[INFO] [stderr]   cargo:include=/opt/rustwide/cargo-home/registry/src/index.crates.io-6f17d22bba15001f/lzma-sys-0.1.20/xz-5.2/src/liblzma/api
[INFO] [stderr]   TARGET = Some("x86_64-apple-darwin")
[INFO] [stderr]   OPT_LEVEL = Some("0")
[INFO] [stderr]   HOST = Some("x86_64-unknown-linux-gnu")
[INFO] [stderr]   cargo:rerun-if-env-changed=CC_x86_64-apple-darwin
[INFO] [stderr]   CC_x86_64-apple-darwin = None
[INFO] [stderr]   cargo:rerun-if-env-changed=CC_x86_64_apple_darwin
[INFO] [stderr]   CC_x86_64_apple_darwin = None
[INFO] [stderr]   cargo:rerun-if-env-changed=TARGET_CC
[INFO] [stderr]   TARGET_CC = None
[INFO] [stderr]   cargo:rerun-if-env-changed=CC
[INFO] [stderr]   CC = None
[INFO] [stderr]   RUSTC_LINKER = None
[INFO] [stderr]   cargo:rerun-if-env-changed=CROSS_COMPILE
[INFO] [stderr]   CROSS_COMPILE = None
[INFO] [stderr]   cargo:rerun-if-env-changed=CC_ENABLE_DEBUG_OUTPUT
[INFO] [stderr]   cargo:rerun-if-env-changed=CRATE_CC_NO_DEFAULTS
[INFO] [stderr]   CRATE_CC_NO_DEFAULTS = None
[INFO] [stderr]   DEBUG = Some("true")
[INFO] [stderr]   CARGO_CFG_TARGET_FEATURE = Some("cmpxchg16b,fxsr,lahfsahf,sse,sse2,sse3,sse4.1,ssse3")
[INFO] [stderr]   cargo:rerun-if-env-changed=CFLAGS_x86_64-apple-darwin
[INFO] [stderr]   CFLAGS_x86_64-apple-darwin = None
[INFO] [stderr]   cargo:rerun-if-env-changed=CFLAGS_x86_64_apple_darwin
[INFO] [stderr]   CFLAGS_x86_64_apple_darwin = None
[INFO] [stderr]   cargo:rerun-if-env-changed=TARGET_CFLAGS
[INFO] [stderr]   TARGET_CFLAGS = None
[INFO] [stderr]   cargo:rerun-if-env-changed=CFLAGS
[INFO] [stderr]   CFLAGS = None
[INFO] [stderr]   cargo:warning=cc: error: unrecognized command-line option '-arch'
[INFO] [stderr]   cargo:warning=cc: error: unrecognized command-line option '-mmacosx-version-min=10.7'
[INFO] [stderr] 
[INFO] [stderr]   --- stderr
[INFO] [stderr] 
[INFO] [stderr] 
[INFO] [stderr]   error occurred: Command "cc" "-O0" "-ffunction-sections" "-fdata-sections" "-fPIC" "-gdwarf-2" "-fno-omit-frame-pointer" "-m64" "-arch" "x86_64" "-mmacosx-version-min=10.7" "-I" "xz-5.2/src/liblzma/api" "-I" "xz-5.2/src/liblzma/lzma" "-I" "xz-5.2/src/liblzma/lz" "-I" "xz-5.2/src/liblzma/check" "-I" "xz-5.2/src/liblzma/simple" "-I" "xz-5.2/src/liblzma/delta" "-I" "xz-5.2/src/liblzma/common" "-I" "xz-5.2/src/liblzma/rangecoder" "-I" "xz-5.2/src/common" "-I" "/opt/rustwide/cargo-home/registry/src/index.crates.io-6f17d22bba15001f/lzma-sys-0.1.20" "-Wall" "-Wextra" "-std=c99" "-pthread" "-DHAVE_CONFIG_H=1" "-o" "/opt/rustwide/target/x86_64-apple-darwin/debug/build/lzma-sys-7d6a004f2ae610b2/out/ebd7929902bc829f-tuklib_cpucores.o" "-c" "xz-5.2/src/common/tuklib_cpucores.c" with args cc did not execute successfully (status code exit status: 1).
[INFO] [stderr] 
[INFO] [stderr] 
[INFO] running `Command { std: "docker" "inspect" "a5d8195f02b070cc0fa07f1315344c0ff977c45353ab81bd6325c163294b8b22", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "a5d8195f02b070cc0fa07f1315344c0ff977c45353ab81bd6325c163294b8b22", kill_on_drop: false }`
[INFO] [stdout] a5d8195f02b070cc0fa07f1315344c0ff977c45353ab81bd6325c163294b8b22