List of all items

Structs

• alignment::record::Flags
• alignment::record::cigar::op::Op
• alignment::record::data::field::tag::Tag
• alignment::record::mapping_quality::MappingQuality
• alignment::record_buf::Builder
• alignment::record_buf::Cigar
• alignment::record_buf::QualityScores
• alignment::record_buf::RecordBuf
• alignment::record_buf::Sequence
• alignment::record_buf::data::Data
• async::io::Reader
• async::io::Writer
• header::Builder
• header::Header
• header::Parser
• header::Programs
• header::record::value::map::Map
• header::record::value::map::builder::Builder
• header::record::value::map::header::Header
• header::record::value::map::header::version::Version
• header::record::value::map::program::Program
• header::record::value::map::read_group::ReadGroup
• header::record::value::map::reference_sequence::ReferenceSequence
• header::record::value::map::reference_sequence::md5_checksum::Md5Checksum
• header::record::value::map::tag::Other
• io::indexed_reader::Builder
• io::indexed_reader::IndexedReader
• io::reader::Builder
• io::reader::Reader
• io::reader::RecordBufs
• io::writer::Builder
• io::writer::Writer
• record::Cigar
• record::QualityScores
• record::Record
• record::Sequence
• record::data::Data
• record::data::field::value::base_modifications::BaseModifications
• record::data::field::value::base_modifications::group::Group

Enums

• alignment::record::cigar::op::kind::Kind
• alignment::record::data::field::Type
• alignment::record::data::field::value::Value
• alignment::record::data::field::value::array::Array
• alignment::record::data::field::value::array::Subtype
• alignment::record::mapping_quality::TryFromIntError
• alignment::record_buf::data::field::value::Array
• alignment::record_buf::data::field::value::Value
• header::ParseError
• header::record::Record
• header::record::kind::Kind
• header::record::kind::ParseError
• header::record::value::map::builder::BuildError
• header::record::value::map::header::tag::Standard
• header::record::value::map::header::version::ParseError
• header::record::value::map::program::tag::Standard
• header::record::value::map::read_group::tag::Standard
• header::record::value::map::reference_sequence::md5_checksum::ParseError
• header::record::value::map::reference_sequence::tag::Standard
• header::record::value::map::tag::ParseError
• header::record::value::map::tag::Tag
• io::CompressionMethod
• record::data::field::value::base_modifications::group::Status
• record::data::field::value::base_modifications::group::Strand
• record::data::field::value::base_modifications::group::UnmodifiedBase
• record::data::field::value::base_modifications::group::modification::Modification
• record::data::field::value::base_modifications::group::modification::ParseError

Traits

• alignment::io::Read
• alignment::io::Write
• alignment::record::QualityScores
• alignment::record::Record
• alignment::record::Sequence
• alignment::record::cigar::Cigar
• alignment::record::data::Data
• alignment::record::data::field::value::array::Values
• header::record::value::map::Inner
• header::record::value::map::builder::Inner
• header::record::value::map::tag::Standard

Functions

• io::writer::record::write_cigar

Type Aliases

• header::ReadGroups
• header::ReferenceSequences
• header::record::value::map::header::tag::Tag

Constants

• header::record::value::map::header::group_order::NONE
• header::record::value::map::header::group_order::QUERY
• header::record::value::map::header::group_order::REFERENCE
• header::record::value::map::header::sort_order::COORDINATE
• header::record::value::map::header::sort_order::QUERY_NAME
• header::record::value::map::header::sort_order::UNKNOWN
• header::record::value::map::header::sort_order::UNSORTED
• header::record::value::map::header::tag::GROUP_ORDER
• header::record::value::map::header::tag::SORT_ORDER
• header::record::value::map::header::tag::SUBSORT_ORDER
• header::record::value::map::program::tag::COMMAND_LINE
• header::record::value::map::program::tag::DESCRIPTION
• header::record::value::map::program::tag::NAME
• header::record::value::map::program::tag::PREVIOUS_PROGRAM_ID
• header::record::value::map::program::tag::VERSION
• header::record::value::map::read_group::platform::CAPILLARY
• header::record::value::map::read_group::platform::DNB_SEQ
• header::record::value::map::read_group::platform::ELEMENT
• header::record::value::map::read_group::platform::HELICOS
• header::record::value::map::read_group::platform::ILLUMINA
• header::record::value::map::read_group::platform::ION_TORRENT
• header::record::value::map::read_group::platform::LS454
• header::record::value::map::read_group::platform::ONT
• header::record::value::map::read_group::platform::PAC_BIO
• header::record::value::map::read_group::platform::SINGULAR
• header::record::value::map::read_group::platform::SOLID
• header::record::value::map::read_group::platform::ULTIMA
• header::record::value::map::read_group::tag::BARCODE
• header::record::value::map::read_group::tag::DESCRIPTION
• header::record::value::map::read_group::tag::FLOW_ORDER
• header::record::value::map::read_group::tag::KEY_SEQUENCE
• header::record::value::map::read_group::tag::LIBRARY
• header::record::value::map::read_group::tag::PLATFORM
• header::record::value::map::read_group::tag::PLATFORM_MODEL
• header::record::value::map::read_group::tag::PLATFORM_UNIT
• header::record::value::map::read_group::tag::PREDICTED_MEDIAN_INSERT_SIZE
• header::record::value::map::read_group::tag::PRODUCED_AT
• header::record::value::map::read_group::tag::PROGRAM
• header::record::value::map::read_group::tag::SAMPLE
• header::record::value::map::read_group::tag::SEQUENCING_CENTER
• header::record::value::map::reference_sequence::molecule_topology::CIRCULAR
• header::record::value::map::reference_sequence::molecule_topology::LINEAR
• header::record::value::map::reference_sequence::tag::ALTERNATIVE_LOCUS
• header::record::value::map::reference_sequence::tag::ALTERNATIVE_NAMES
• header::record::value::map::reference_sequence::tag::ASSEMBLY_ID
• header::record::value::map::reference_sequence::tag::DESCRIPTION
• header::record::value::map::reference_sequence::tag::MD5_CHECKSUM
• header::record::value::map::reference_sequence::tag::MOLECULE_TOPOLOGY
• header::record::value::map::reference_sequence::tag::SPECIES
• header::record::value::map::reference_sequence::tag::URI
• record::data::field::value::base_modifications::group::modification::EIGHT_OXOGUANINE
• record::data::field::value::base_modifications::group::modification::FIVE_CARBOXYLCYTOSINE
• record::data::field::value::base_modifications::group::modification::FIVE_CARBOXYLURACIL
• record::data::field::value::base_modifications::group::modification::FIVE_FORMYLCYTOSINE
• record::data::field::value::base_modifications::group::modification::FIVE_FORMYLURACIL
• record::data::field::value::base_modifications::group::modification::FIVE_HYDROXYMETHYLCYTOSINE
• record::data::field::value::base_modifications::group::modification::FIVE_HYDROXYMETHYLURACIL
• record::data::field::value::base_modifications::group::modification::FIVE_METHYLCYTOSINE
• record::data::field::value::base_modifications::group::modification::SIX_METHYLADENINE
• record::data::field::value::base_modifications::group::modification::XANTHOSINE