Crate drug_extraction_cli

Structs

ColumnInfo

DataSet

Struct to hold information about the dataset

SearchOutput

Struct to hold search output

SearchTerm

Struct to hold search term and metadata

Functions

clean_text

Function to remove non-alphanumeric characters from a string keeps hyphens due to their usage in abbreviations/medical terms. Also uppercase for standardization. Example:

collect_column_info

Function to collect column info for each column to search Typically ran using the header from the csv reader and is called inside the initialize_dataset function to do this for each target column. Example:

get_column_info

Function to get the column index for a given column name Returns an error if the column name is not found Typically ran using the header from the csv reader and is called inside the collect_column_info function to do this for each target column. Example:

initialize_dataset

Function to initialize the dataset

read_terms_from_file

Function to read in search terms from a csv file Performs cleaning of terms, ignoring metadata column

run_searcher

search

Primary search function