Struct noodles_cram::record::Flags

pub struct Flags(_);

CRAM record flags.

Implementations

impl Flags

pub const QUALITY_SCORES_STORED_AS_ARRAY: Self = _

The per-base quality scores are stored as an array, as opposed to read features (0x01).

pub const DETACHED: Self = _

The mate is in another slice (0x02).

pub const HAS_MATE_DOWNSTREAM: Self = _

The mate is after the current record (0x04).

pub const DECODE_SEQUENCE_AS_UNKNOWN: Self = _

The sequence is unknown (0x08).

impl Flags

pub const fn empty() -> Self

Returns an empty set of flags.

pub const fn all() -> Self

Returns the set containing all flags.

pub const fn bits(&self) -> u8

Returns the raw value of the flags currently stored.

pub const fn from_bits(bits: u8) -> Option<Self>

Convert from underlying bit representation, unless that representation contains bits that do not correspond to a flag.

pub const fn from_bits_truncate(bits: u8) -> Self

Convert from underlying bit representation, dropping any bits that do not correspond to flags.

pub const fn from_bits_retain(bits: u8) -> Self

Convert from underlying bit representation, preserving all bits (even those not corresponding to a defined flag).

pub fn from_name(name: &str) -> Option<Self>

Get the value for a flag from its stringified name.

Names are case-sensitive, so must correspond exactly to the identifier given to the flag.

pub const fn is_empty(&self) -> bool

Returns true if no flags are currently stored.

pub const fn is_all(&self) -> bool

Returns true if all flags are currently set.

pub const fn intersects(&self, other: Self) -> bool

Returns true if there are flags common to both self and other.

pub const fn contains(&self, other: Self) -> bool

Returns true if all of the flags in other are contained within self.

pub fn insert(&mut self, other: Self)

Inserts the specified flags in-place.

This method is equivalent to union.

pub fn remove(&mut self, other: Self)

Removes the specified flags in-place.

This method is equivalent to difference.

pub fn toggle(&mut self, other: Self)

Toggles the specified flags in-place.

This method is equivalent to symmetric_difference.

pub fn set(&mut self, other: Self, value: bool)

Inserts or removes the specified flags depending on the passed value.

pub const fn intersection(self, other: Self) -> Self

Returns the intersection between the flags in self and other.

Calculating self bitwise and (&) other, including any bits that don’t correspond to a defined flag.

pub const fn union(self, other: Self) -> Self

Returns the union of between the flags in self and other.

Calculates self bitwise or (|) other, including any bits that don’t correspond to a defined flag.

pub const fn difference(self, other: Self) -> Self

Returns the difference between the flags in self and other.

Calculates self bitwise and (&!) the bitwise negation of other, including any bits that don’t correspond to a defined flag.

This method is not equivalent to a & !b when there are bits set that don’t correspond to a defined flag. The ! operator will unset any bits that don’t correspond to a flag, so they’ll always be unset by a &! b, but respected by a.difference(b).

pub const fn symmetric_difference(self, other: Self) -> Self

Returns the symmetric difference between the flags in self and other.

Calculates self bitwise exclusive or (^) other, including any bits that don’t correspond to a defined flag.

pub const fn complement(self) -> Self

Returns the complement of this set of flags.

Calculates the bitwise negation (!) of self, unsetting any bits that don’t correspond to a defined flag.

impl Flags

pub const fn iter(&self) -> Iter<Flags>

Iterate over enabled flag values.

pub const fn iter_names(&self) -> IterNames<Flags>

Iterate over enabled flag values with their stringified names.

impl Flags

pub fn are_quality_scores_stored_as_array(self) -> bool

Returns whether the QUALITY_SCORES_STORED_AS_ARRAY flag is set.

Examples

use noodles_cram::record::Flags;
let flags = Flags::QUALITY_SCORES_STORED_AS_ARRAY;
assert!(flags.are_quality_scores_stored_as_array());

pub fn is_detached(self) -> bool

Returns whether the DETACHED flag is set.

Examples

use noodles_cram::record::Flags;
assert!(Flags::DETACHED.is_detached());

pub fn has_mate_downstream(self) -> bool

Returns whether the HAS_MATE_DOWNSTREAM flag is set.

Examples

use noodles_cram::record::Flags;
assert!(Flags::HAS_MATE_DOWNSTREAM.has_mate_downstream());

pub fn decode_sequence_as_unknown(self) -> bool

Returns whether the DECODE_SEQUENCE_AS_UNKNOWN flag is set.

Examples

use noodles_cram::record::Flags;
let flags = Flags::DECODE_SEQUENCE_AS_UNKNOWN;
assert!(flags.decode_sequence_as_unknown());

Trait Implementations

impl Binary for Flags

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl BitAnd<Flags> for Flags

fn bitand(self, other: Self) -> Self

Returns the intersection between the two sets of flags.

type Output = Flags

The resulting type after applying the & operator.

impl BitAndAssign<Flags> for Flags

fn bitand_assign(&mut self, other: Self)

Disables all flags disabled in the set.

impl BitOr<Flags> for Flags

fn bitor(self, other: Flags) -> Self

Returns the union of the two sets of flags.

type Output = Flags

The resulting type after applying the | operator.

impl BitOrAssign<Flags> for Flags

fn bitor_assign(&mut self, other: Self)

Adds the set of flags.

impl BitXor<Flags> for Flags

fn bitxor(self, other: Self) -> Self

Returns the left flags, but with all the right flags toggled.

type Output = Flags

The resulting type after applying the ^ operator.

impl BitXorAssign<Flags> for Flags

fn bitxor_assign(&mut self, other: Self)

Toggles the set of flags.

impl Clone for Flags

fn clone(&self) -> Flags

Returns a copy of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for Flags

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Default for Flags

fn default() -> Flags

Returns the “default value” for a type.

impl Extend<Flags> for Flags

fn extend<T: IntoIterator<Item = Self>>(&mut self, iterator: T)

Extends a collection with the contents of an iterator.

fn extend_one(&mut self, item: A)

🔬This is a nightly-only experimental API. (extend_one)

Extends a collection with exactly one element.

fn extend_reserve(&mut self, additional: usize)

🔬This is a nightly-only experimental API. (extend_one)

Reserves capacity in a collection for the given number of additional elements.

impl Flags for Flags

const FLAGS: &'static [Flag<Flags>] = _

The set of available flags and their names.

type Bits = u8

The underlying storage type.

fn bits(&self) -> u8

Returns the raw value of the flags currently stored.

fn from_bits_retain(bits: u8) -> Flags

Convert from underlying bit representation, preserving all bits (even those not corresponding to a defined flag).

fn empty() -> Self

Returns an empty set of flags.

fn all() -> Self

Returns the set containing all flags.

fn from_bits(bits: Self::Bits) -> Option<Self>

Convert from underlying bit representation, unless that representation contains bits that do not correspond to a flag.

fn from_bits_truncate(bits: Self::Bits) -> Self

Convert from underlying bit representation, dropping any bits that do not correspond to flags.

fn from_name(name: &str) -> Option<Self>

Get the flag for a particular name.

fn iter(&self) -> Iter<Self>

Iterate over enabled flag values.

fn iter_names(&self) -> IterNames<Self>

Iterate over the raw names and bits for enabled flag values.

fn is_empty(&self) -> bool

Returns true if no flags are currently stored.

fn is_all(&self) -> bool

Returns true if all flags are currently set.

fn intersects(&self, other: Self) -> boolwhere Self: Sized,

Returns true if there are flags common to both self and other.

fn contains(&self, other: Self) -> boolwhere Self: Sized,

Returns true if all of the flags in other are contained within self.

fn insert(&mut self, other: Self)where Self: Sized,

Inserts the specified flags in-place.

fn remove(&mut self, other: Self)where Self: Sized,

Removes the specified flags in-place.

fn toggle(&mut self, other: Self)where Self: Sized,

Toggles the specified flags in-place.

fn set(&mut self, other: Self, value: bool)where Self: Sized,

Inserts or removes the specified flags depending on the passed value.

fn intersection(self, other: Self) -> Self

Returns the intersection between the flags in self and other.

fn union(self, other: Self) -> Self

Returns the union of between the flags in self and other.

fn difference(self, other: Self) -> Self

Returns the difference between the flags in self and other.

fn symmetric_difference(self, other: Self) -> Self

Returns the symmetric difference between the flags in self and other.

fn complement(self) -> Self

Returns the complement of this set of flags.

impl From<Flags> for u8

fn from(flags: Flags) -> Self

Converts to this type from the input type.

impl From<u8> for Flags

fn from(value: u8) -> Self

Converts to this type from the input type.

impl FromIterator<Flags> for Flags

fn from_iter<T: IntoIterator<Item = Self>>(iterator: T) -> Self

Creates a value from an iterator.

impl IntoIterator for Flags

type Item = Flags

The type of the elements being iterated over.

type IntoIter = Iter<Flags>

Which kind of iterator are we turning this into?

fn into_iter(self) -> Self::IntoIter

Creates an iterator from a value.

impl LowerHex for Flags

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Not for Flags

fn not(self) -> Self

Returns the complement of this set of flags.

type Output = Flags

The resulting type after applying the ! operator.

impl Octal for Flags

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl PartialEq<Flags> for Flags

fn eq(&self, other: &Flags) -> bool

This method tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

This method tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl PublicFlags for Flags

type Primitive = u8

The type of the underlying storage.

type Internal = InternalBitFlags

The type of the internal field on the generated flags type.

impl Sub<Flags> for Flags

fn sub(self, other: Self) -> Self

Returns the set difference of the two sets of flags.

type Output = Flags

The resulting type after applying the - operator.

impl SubAssign<Flags> for Flags

fn sub_assign(&mut self, other: Self)

Disables all flags enabled in the set.

impl UpperHex for Flags

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Copy for Flags

impl Eq for Flags

impl StructuralEq for Flags

impl StructuralPartialEq for Flags