Struct noodles_cram::reader::Builder

pub struct Builder { /* private fields */ }

A CRAM reader builder.

Implementations

impl Builder

pub fn set_reference_sequence_repository( self, reference_sequence_repository: Repository ) -> Self

Sets the reference sequence repository.

Examples

use noodles_cram as cram;
use noodles_fasta as fasta;

let reference_sequence_repository = fasta::Repository::default();

let builder = cram::reader::Builder::default()
    .set_reference_sequence_repository(reference_sequence_repository);

pub fn build_from_path<P>(self, src: P) -> Result<Reader<File>>

where P: AsRef<Path>,

Builds a CRAM reader from a path.

Examples

use noodles_cram as cram;
let reader = cram::reader::Builder::default().build_from_path("sample.cram")?;

pub fn build_from_reader<R>(self, reader: R) -> Reader<R>

where R: Read,

Builds a CRAM reader from a reader.

Examples

use noodles_cram as cram;
let reader = cram::reader::Builder::default().build_from_reader(io::empty());

Trait Implementations

impl Debug for Builder

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Default for Builder

fn default() -> Builder

Returns the “default value” for a type.