Enum noodles_cram::data_container::compression_header::data_series_encoding_map::DataSeries

pub enum DataSeries {
    BamBitFlags,
    CramBitFlags,
    ReferenceId,
    ReadLengths,
    InSeqPositions,
    ReadGroups,
    ReadNames,
    NextMateBitFlags,
    NextFragmentReferenceSequenceId,
    NextMateAlignmentStart,
    TemplateSize,
    DistanceToNextFragment,
    TagIds,
    NumberOfReadFeatures,
    ReadFeaturesCodes,
    InReadPositions,
    DeletionLengths,
    StretchesOfBases,
    StretchesOfQualityScores,
    BaseSubstitutionCodes,
    Insertion,
    ReferenceSkipLength,
    Padding,
    HardClip,
    SoftClip,
    MappingQualities,
    Bases,
    QualityScores,
    ReservedTc,
    ReservedTn,
}

A CRAM data container compression header data series.

Variants

BamBitFlags

BAM bit flags (BF).

CramBitFlags

CRAM bit flags (CF).

ReferenceId

Reference ID (RI).

ReadLengths

Read lengths (RL).

InSeqPositions

In-seq positions (AP).

ReadGroups

Read groups (RG).

ReadNames

Read names (RN).

NextMateBitFlags

Next mate bit flags (MF).

NextFragmentReferenceSequenceId

Next fragment reference sequence ID (NS).

NextMateAlignmentStart

Next mate alignment start (NP).

TemplateSize

Template size (TS).

DistanceToNextFragment

Distance to next fragment (NF).

TagIds

Tag IDs (TL).

NumberOfReadFeatures

Number of read features (FN).

ReadFeaturesCodes

Read features codes (FC).

InReadPositions

In-read positions (FP).

DeletionLengths

Deletion lengths (DL).

StretchesOfBases

Stretches of bases (BB).

StretchesOfQualityScores

Stretches of quality scores (QQ).

BaseSubstitutionCodes

Base substitution codes (BS).

Insertion

Insertion (IN).

ReferenceSkipLength

Reference skip length (RS).

Padding

Padding (PD).

HardClip

Hard clip (HC).

SoftClip

Soft clip (SC).

MappingQualities

Mapping qualities (MQ).

Bases

Bases (BA).

QualityScores

Quality scores (QS).

ReservedTc

Read tag counts (TC).

This is a legacy CRAM 1.0 data series.

ReservedTn

Read tag names and types (TN).

This is a legacy CRAM 1.0 data series.

Trait Implementations

impl Clone for DataSeries

fn clone(&self) -> DataSeries

Returns a copy of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for DataSeries

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl From<DataSeries> for [u8; 2]

fn from(data_series: DataSeries) -> Self

Converts to this type from the input type.

impl Hash for DataSeries

fn hash<__H: Hasher>(&self, state: &mut __H)

Feeds this value into the given Hasher.

fn hash_slice<H>(data: &[Self], state: &mut H)

where H: Hasher, Self: Sized,

Feeds a slice of this type into the given Hasher.

impl PartialEq for DataSeries

fn eq(&self, other: &DataSeries) -> bool

This method tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

This method tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl TryFrom<[u8; 2]> for DataSeries

type Error = TryFromByteArrayError

The type returned in the event of a conversion error.

fn try_from(b: [u8; 2]) -> Result<Self, Self::Error>

Performs the conversion.

impl Copy for DataSeries

impl Eq for DataSeries

impl StructuralPartialEq for DataSeries