Enum Code

pub enum Code {
    Bases,
    Scores,
    ReadBase,
    Substitution,
    Insertion,
    Deletion,
    InsertBase,
    QualityScore,
    ReferenceSkip,
    SoftClip,
    Padding,
    HardClip,
}

A CRAM record feature kind.

Variants

Bases

A stretch of bases (b).

Scores

A stretch of quality scores (q).

ReadBase

A (base, quality score) pair (B).

Substitution

A base substitution (CIGAR op X, M and =; X).

Insertion

Inserted bases (CIGAR op I; I).

Deletion

A number of deleted bases (CIGAR op D; D).

InsertBase

A single inserted base (CIGAR op I; i).

QualityScore

A single quality score (Q).

ReferenceSkip

A number of skipped bases (CIGAR op N; N).

SoftClip

Soft clipped bases (CIGAR op S; S).

Padding

A number of padded bases (CIGAR op P; P).

HardClip

A number of hard clipped bases (CIGAR op H, H).

Trait Implementations

impl Clone for Code

fn clone(&self) -> Code

Returns a copy of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for Code

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl From<Code> for u8

fn from(code: Code) -> Self

Converts to this type from the input type.

impl PartialEq for Code

fn eq(&self, other: &Code) -> bool

Tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

Tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl TryFrom<u8> for Code

type Error = TryFromByteError

The type returned in the event of a conversion error.

fn try_from(n: u8) -> Result<Self, Self::Error>

Performs the conversion.

impl Copy for Code

impl Eq for Code

impl StructuralPartialEq for Code