noodles_cram::data_container::compression_header::data_series_encoding_map

Enum DataSeries

pub enum DataSeries {
Show 30 variants    BamFlags,
    CramFlags,
    ReferenceSequenceIds,
    ReadLengths,
    AlignmentStarts,
    ReadGroupIds,
    Names,
    MateFlags,
    MateReferenceSequenceId,
    MateAlignmentStart,
    TemplateLengths,
    MateDistances,
    TagSetIds,
    FeatureCounts,
    FeatureCodes,
    FeaturePositionDeltas,
    DeletionLengths,
    StretchesOfBases,
    StretchesOfQualityScores,
    BaseSubstitutionCodes,
    InsertionBases,
    ReferenceSkipLengths,
    PaddingLengths,
    HardClipLengths,
    SoftClipBases,
    MappingQualities,
    Bases,
    QualityScores,
    ReservedTc,
    ReservedTn,
}

Expand description

A CRAM data container compression header data series.

Variants§

BamFlags

BAM bit flags (BF).

CramFlags

CRAM bit flags (CF).

ReferenceSequenceIds

Reference ID (RI).

ReadLengths

Read lengths (RL).

AlignmentStarts

In-seq positions (AP).

ReadGroupIds

Read groups (RG).

Names

Read names (RN).

MateFlags

Next mate bit flags (MF).

MateReferenceSequenceId

Next fragment reference sequence ID (NS).

MateAlignmentStart

Next mate alignment start (NP).

TemplateLengths

Template size (TS).

MateDistances

Distance to next fragment (NF).

TagSetIds

Tag IDs (TL).

FeatureCounts

Number of read features (FN).

FeatureCodes

Read features codes (FC).

FeaturePositionDeltas

In-read positions (FP).

DeletionLengths

Deletion lengths (DL).

StretchesOfBases

Stretches of bases (BB).

StretchesOfQualityScores

Stretches of quality scores (QQ).

BaseSubstitutionCodes

Base substitution codes (BS).

InsertionBases

Insertion (IN).

ReferenceSkipLengths

Reference skip length (RS).

PaddingLengths

Padding (PD).

HardClipLengths

Hard clip (HC).

SoftClipBases

Soft clip (SC).

MappingQualities

Mapping qualities (MQ).

Bases

Bases (BA).

QualityScores

Quality scores (QS).

ReservedTc

Read tag counts (TC).

This is a legacy CRAM 1.0 data series.

ReservedTn

Read tag names and types (TN).

This is a legacy CRAM 1.0 data series.

Trait Implementations§

impl Clone for DataSeries

fn clone(&self) -> DataSeries

Returns a copy of the value. Read more

1.0.0 · Source§

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source. Read more

impl Debug for DataSeries

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter. Read more

impl From<DataSeries> for [u8; 2]

fn from(data_series: DataSeries) -> Self

Converts to this type from the input type.

impl Hash for DataSeries

fn hash<H: Hasher>(&self, state: &mut H)

Feeds this value into the given Hasher. Read more

1.3.0 · Source§

fn hash_slice<H>(data: &[Self], state: &mut H)
where H: Hasher, Self: Sized,

Feeds a slice of this type into the given Hasher. Read more

impl PartialEq for DataSeries

fn eq(&self, other: &DataSeries) -> bool

Tests for self and other values to be equal, and is used by ==.

1.0.0 · Source§

fn ne(&self, other: &Rhs) -> bool

Tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl TryFrom<[u8; 2]> for DataSeries

type Error = TryFromByteArrayError

The type returned in the event of a conversion error.

fn try_from(b: [u8; 2]) -> Result<Self, Self::Error>

Performs the conversion.

impl Copy for DataSeries

impl Eq for DataSeries

impl StructuralPartialEq for DataSeries

Auto Trait Implementations§

impl Freeze for DataSeries

impl RefUnwindSafe for DataSeries

impl Send for DataSeries

impl Sync for DataSeries

impl Unpin for DataSeries

impl UnwindSafe for DataSeries

Blanket Implementations§

impl<T> Any for T
where T: 'static + ?Sized,

fn type_id(&self) -> TypeId

Gets the TypeId of self. Read more

impl<T> Borrow<T> for T
where T: ?Sized,

fn borrow(&self) -> &T

Immutably borrows from an owned value. Read more

impl<T> BorrowMut<T> for T
where T: ?Sized,

fn borrow_mut(&mut self) -> &mut T

Mutably borrows from an owned value. Read more

impl<T> CloneToUninit for T
where T: Clone,

unsafe fn clone_to_uninit(&self, dst: *mut T)

🔬This is a nightly-only experimental API. (clone_to_uninit)

Performs copy-assignment from self to dst. Read more

impl<Q, K> Equivalent<K> for Q
where Q: Eq + ?Sized, K: Borrow<Q> + ?Sized,

fn equivalent(&self, key: &K) -> bool

Checks if this value is equivalent to the given key. Read more

impl<Q, K> Equivalent<K> for Q
where Q: Eq + ?Sized, K: Borrow<Q> + ?Sized,

fn equivalent(&self, key: &K) -> bool

Compare self to key and return true if they are equal.

impl<T> From<T> for T

fn from(t: T) -> T

Returns the argument unchanged.

impl<T, U> Into<U> for T
where U: From<T>,

fn into(self) -> U

Calls U::from(self).

That is, this conversion is whatever the implementation of From<T> for U chooses to do.

impl<T> Same for T

type Output = T

Should always be Self

impl<T> ToOwned for T
where T: Clone,

type Owned = T

The resulting type after obtaining ownership.

fn to_owned(&self) -> T

Creates owned data from borrowed data, usually by cloning. Read more

fn clone_into(&self, target: &mut T)

Uses borrowed data to replace owned data, usually by cloning. Read more

impl<T, U> TryFrom<U> for T
where U: Into<T>,

type Error = Infallible

The type returned in the event of a conversion error.

fn try_from(value: U) -> Result<T, <T as TryFrom<U>>::Error>

Performs the conversion.

impl<T, U> TryInto<U> for T
where U: TryFrom<T>,

type Error = <U as TryFrom<T>>::Error

The type returned in the event of a conversion error.

fn try_into(self) -> Result<U, <U as TryFrom<T>>::Error>

Performs the conversion.