Enum Feature

pub enum Feature {
    Bases {
        position: Position,
        bases: Vec<u8>,
    },
    Scores {
        position: Position,
        quality_scores: Vec<u8>,
    },
    ReadBase {
        position: Position,
        base: u8,
        quality_score: u8,
    },
    Substitution {
        position: Position,
        value: Value,
    },
    Insertion {
        position: Position,
        bases: Vec<u8>,
    },
    Deletion {
        position: Position,
        len: usize,
    },
    InsertBase {
        position: Position,
        base: u8,
    },
    QualityScore {
        position: Position,
        quality_score: u8,
    },
    ReferenceSkip {
        position: Position,
        len: usize,
    },
    SoftClip {
        position: Position,
        bases: Vec<u8>,
    },
    Padding {
        position: Position,
        len: usize,
    },
    HardClip {
        position: Position,
        len: usize,
    },
}

A CRAM record feature.

Variants

Bases

A stretch of bases.

Fields

position: Position

bases: Vec<u8>

Scores

A stretch of quality scores.

Fields

position: Position

quality_scores: Vec<u8>

ReadBase

A base-quality score pair.

Fields

position: Position

base: u8

quality_score: u8

Substitution

A base substitution.

Fields

position: Position

value: Value

Insertion

Inserted bases.

Fields

position: Position

bases: Vec<u8>

Deletion

A number of deleted bases.

Fields

position: Position

len: usize

InsertBase

A single inserted base.

Fields

position: Position

base: u8

QualityScore

A single quality score.

Fields

position: Position

quality_score: u8

ReferenceSkip

A number of skipped bases.

Fields

position: Position

len: usize

SoftClip

Soft clipped bases.

Fields

position: Position

bases: Vec<u8>

Padding

A number of padded bases.

Fields

position: Position

len: usize

HardClip

A number of hard clipped bases.

Fields

position: Position

len: usize

Implementations

impl Feature

pub fn code(&self) -> Code

Returns the feature code.

Examples

use noodles_core::Position;
use noodles_cram::record::{feature::Code, Feature};

let position = Position::try_from(8)?;
let feature = Feature::Padding{ position, len: 13 };

assert_eq!(feature.code(), Code::Padding);

pub fn position(&self) -> Position

Returns the feature position.

Examples

use noodles_core::Position;
use noodles_cram::record::Feature;

let position = Position::try_from(8)?;
let feature = Feature::Padding{ position, len: 13 };

assert_eq!(feature.position(), position);

Trait Implementations

impl Clone for Feature

fn clone(&self) -> Feature

Returns a copy of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for Feature

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl PartialEq for Feature

fn eq(&self, other: &Feature) -> bool

Tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

Tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl Eq for Feature

impl StructuralPartialEq for Feature