Struct noodles_fasta::record::Record

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pub struct Record { /* private fields */ }

Expand description

A FASTA record.

Implementations

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impl Record

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pub fn new(definition: Definition, sequence: Sequence) -> Self

Creates a FASTA record from a definition and sequence.

Examples

use noodles_fasta::{self as fasta, record::{Definition, Sequence}};
let definition = Definition::new("sq0", None);
let sequence = Sequence::from(b"ACGT".to_vec());
let record = fasta::Record::new(definition, sequence);

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pub fn definition(&self) -> &Definition

Returns the record definition.

Examples

use noodles_fasta::{self as fasta, record::{Definition, Sequence}};

let definition = Definition::new("sq0", None);
let sequence = Sequence::from(b"ACGT".to_vec());
let record = fasta::Record::new(definition.clone(), sequence);

assert_eq!(record.definition(), &definition);

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pub fn reference_sequence_name(&self) -> &str

👎 Deprecated since 0.2.0:

Use name instead.

Returns the reference sequence name.

Examples

use noodles_fasta::{self as fasta, record::{Definition, Sequence}};

let definition = Definition::new("sq0", None);
let sequence = Sequence::from(b"ACGT".to_vec());
let record = fasta::Record::new(definition, sequence);

assert_eq!(record.reference_sequence_name(), "sq0");

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pub fn name(&self) -> &str

Returns the record name.

Examples

use noodles_fasta::{self as fasta, record::{Definition, Sequence}};

let definition = Definition::new("sq0", None);
let sequence = Sequence::from(b"ACGT".to_vec());
let record = fasta::Record::new(definition, sequence);

assert_eq!(record.name(), "sq0");

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pub fn description(&self) -> Option<&str>

Returns the description.

Examples

use noodles_fasta::{self as fasta, record::{Definition, Sequence}};

let definition = Definition::new("sq0", Some(String::from("LN:4")));
let sequence = Sequence::from(b"ACGT".to_vec());
let record = fasta::Record::new(definition, sequence);

assert_eq!(record.description(), Some("LN:4"));

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pub fn sequence(&self) -> &Sequence

Returns the sequence.

Examples

use noodles_fasta::{self as fasta, record::{Definition, Sequence}};

let definition = Definition::new("sq0", None);
let sequence = Sequence::from(b"ACGT".to_vec());
let record = fasta::Record::new(definition, sequence.clone());

assert_eq!(record.sequence(), &sequence);