Crate noodles_gff

Source
Expand description

noodles-gff handles the reading and writing of the GFF3 format.

GFF (Generic Feature Format) is a text-based format used to represent genomic features.

§Examples

§Read all records in a GFF3 file

use noodles_gff as gff;

let mut reader = File::open("annotations.gff3")
    .map(BufReader::new)
    .map(gff::io::Reader::new)?;

for result in reader.records() {
    let record = result?;

    println!(
        "{}\t{}\t{}",
        record.reference_sequence_name(),
        record.start(),
        record.end(),
    );
}

Re-exports§

  • pub use self::directive::Directive;
  • pub use self::line::Line;
  • pub use self::record::Record;
  • pub use self::io::Reader;
  • pub use self::io::Writer;
  • pub use self::async::io::Reader as AsyncReader;

Modules§