Trait Sequence

pub trait Sequence {
    // Required methods
    fn is_empty(&self) -> bool;
    fn len(&self) -> usize;
    fn get(&self, i: usize) -> Option<u8>;
    fn split_at_checked(
        &self,
        mid: usize,
    ) -> Option<(Box<dyn Sequence + '_>, Box<dyn Sequence + '_>)>;
    fn iter(&self) -> Box<dyn Iterator<Item = u8> + '_>;
}

An alignment record sequence.

Required Methods

fn is_empty(&self) -> bool

Returns whether there are any bases.

fn len(&self) -> usize

Returns the number of bases.

fn get(&self, i: usize) -> Option<u8>

Returns the base at the given index.

fn split_at_checked( &self, mid: usize, ) -> Option<(Box<dyn Sequence + '_>, Box<dyn Sequence + '_>)>

Splits the subsequence into two subsequences at the given index.

fn iter(&self) -> Box<dyn Iterator<Item = u8> + '_>

Returns an iterator over bases.

Trait Implementations

impl<'a> IntoIterator for &'a dyn Sequence

type Item = u8

The type of the elements being iterated over.

type IntoIter = Box<dyn Iterator<Item = <&'a dyn Sequence as IntoIterator>::Item> + 'a>

Which kind of iterator are we turning this into?

fn into_iter(self) -> Self::IntoIter

Creates an iterator from a value.

impl Sequence for Box<dyn Sequence + '_>

fn is_empty(&self) -> bool

Returns whether there are any bases.

fn len(&self) -> usize

Returns the number of bases.

fn get(&self, i: usize) -> Option<u8>

Returns the base at the given index.

fn split_at_checked( &self, mid: usize, ) -> Option<(Box<dyn Sequence + '_>, Box<dyn Sequence + '_>)>

Splits the subsequence into two subsequences at the given index.

fn iter(&self) -> Box<dyn Iterator<Item = u8> + '_>

Returns an iterator over bases.

Implementations on Foreign Types

impl Sequence for Box<dyn Sequence + '_>

fn is_empty(&self) -> bool

fn len(&self) -> usize

fn get(&self, i: usize) -> Option<u8>

fn split_at_checked( &self, mid: usize, ) -> Option<(Box<dyn Sequence + '_>, Box<dyn Sequence + '_>)>

fn iter(&self) -> Box<dyn Iterator<Item = u8> + '_>

Implementors

impl Sequence for &noodles_sam::alignment::record_buf::Sequence

impl<'a> Sequence for noodles_sam::record::Sequence<'a>