Struct Sequence

pub struct Sequence(/* private fields */);

An alignment record sequence buffer.

Implementations

impl Sequence

pub fn is_empty(&self) -> bool

Returns whether there are any bases.

pub fn len(&self) -> usize

Returns the number of bases.

pub fn get(&self, i: usize) -> Option<u8>

Returns the base at the given index.

Trait Implementations

impl AsMut<Vec<u8>> for Sequence

fn as_mut(&mut self) -> &mut Vec<u8>

Converts this type into a mutable reference of the (usually inferred) input type.

impl AsRef<[u8]> for Sequence

fn as_ref(&self) -> &[u8]

Converts this type into a shared reference of the (usually inferred) input type.

impl Clone for Sequence

fn clone(&self) -> Sequence

Returns a copy of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for Sequence

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Default for Sequence

fn default() -> Sequence

Returns the “default value” for a type.

impl From<&[u8]> for Sequence

fn from(buf: &[u8]) -> Self

Converts to this type from the input type.

impl<const N: usize> From<&[u8; N]> for Sequence

fn from(buf: &[u8; N]) -> Self

Converts to this type from the input type.

impl<'a> From<Sequence<'a>> for Sequence

fn from(sequence: Sequence<'a>) -> Self

Converts to this type from the input type.

impl From<Sequence> for Vec<u8>

fn from(sequence: Sequence) -> Self

Converts to this type from the input type.

impl From<Vec<u8>> for Sequence

fn from(bases: Vec<u8>) -> Self

Converts to this type from the input type.

impl<I> Index<I> for Sequence

where I: SequenceIndex<u8>,

type Output = <I as SequenceIndex<u8>>::Output

The returned type after indexing.

fn index(&self, index: I) -> &Self::Output

Performs the indexing (container[index]) operation.

impl<I> IndexMut<I> for Sequence

where I: SequenceIndex<u8>,

fn index_mut(&mut self, index: I) -> &mut Self::Output

Performs the mutable indexing (container[index]) operation.

impl PartialEq for Sequence

fn eq(&self, other: &Sequence) -> bool

Tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

Tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl Sequence for &Sequence

fn is_empty(&self) -> bool

Returns whether there are any bases.

fn len(&self) -> usize

Returns the number of bases.

fn get(&self, i: usize) -> Option<u8>

Returns the base at the given index.

fn split_at_checked( &self, mid: usize, ) -> Option<(Box<dyn Sequence + '_>, Box<dyn Sequence + '_>)>

Splits the subsequence into two subsequences at the given index.

fn iter(&self) -> Box<dyn Iterator<Item = u8> + '_>

Returns an iterator over bases.

impl Eq for Sequence

impl StructuralPartialEq for Sequence