Enum noodles_vcf::header::ParseError[−][src]

pub enum ParseError {
Show 17 variants    MissingFileFormat,
    UnexpectedFileFormat,
    InvalidFileFormat(ParseError),
    InvalidRecord(ParseError),
    InvalidRecordValue,
    InvalidInfo(TryFromRecordError),
    InvalidFilter(TryFromRecordError),
    InvalidFormat(TryFromRecordError),
    InvalidAlternativeAllele(TryFromRecordError),
    InvalidContig(TryFromRecordError),
    InvalidMeta(TryFromRecordError),
    InvalidSample(TryFromRecordError),
    InvalidPedigree(TryFromRecordError),
    MissingHeader,
    InvalidHeader(String, String),
    DuplicateSampleName(String),
    ExpectedEof,
}

Expand description

An error returned when a raw VCF header fails to parse.

Variants

`MissingFileFormat`

The file format (fileformat) is missing.

`UnexpectedFileFormat`

The file format (fileformat) appears other than the first line.

`InvalidFileFormat(ParseError)`

Tuple Fields

0: ParseError

The file format (fileformat) is invalid.

`InvalidRecord(ParseError)`

Tuple Fields

0: ParseError

A record is invalid.

`InvalidRecordValue`

A record has an invalid value.

`InvalidInfo(TryFromRecordError)`

Tuple Fields

0: TryFromRecordError

An information record (INFO) is invalid.

`InvalidFilter(TryFromRecordError)`

Tuple Fields

0: TryFromRecordError

A filter record (FILTER) is invalid.

`InvalidFormat(TryFromRecordError)`

Tuple Fields

0: TryFromRecordError

A genotype format record (FORMAT) is invalid.

`InvalidAlternativeAllele(TryFromRecordError)`

Tuple Fields

0: TryFromRecordError

A symboloic alternate allele record (ALT) is invalid.

`InvalidContig(TryFromRecordError)`

Tuple Fields

0: TryFromRecordError

A contig record (contig) is invalid.

`InvalidMeta(TryFromRecordError)`

Tuple Fields

0: TryFromRecordError

A meta record (META) is invalid.

`InvalidSample(TryFromRecordError)`

Tuple Fields

0: TryFromRecordError

A sample record (SAMPLE) is invalid.

`InvalidPedigree(TryFromRecordError)`

Tuple Fields

0: TryFromRecordError

A pedigree record (PEDIGREE) is invalid.

`MissingHeader`

The header is missing.

`InvalidHeader(String, String)`

Tuple Fields

0: String

1: String

The header is invalid.

`DuplicateSampleName(String)`

Tuple Fields

0: String

A sample name is duplicated.

§ 1.5 Header line syntax (2021-01-13): “Duplicate sample IDs are not allowed.”

`ExpectedEof`

More data unexpectedly appears after the header header (#CHROM…).

Trait Implementations

impl Clone for ParseError

fn clone(&self) -> ParseError

Returns a copy of the value. Read more

1.0.0[src]

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source. Read more

impl Debug for ParseError

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter. Read more

impl Display for ParseError

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter. Read more

impl Error for ParseError

1.30.0[src]

fn source(&self) -> Option<&(dyn Error + 'static)>

The lower-level source of this error, if any. Read more

fn backtrace(&self) -> Option<&Backtrace>

🔬 This is a nightly-only experimental API. (backtrace)

Returns a stack backtrace, if available, of where this error occurred. Read more

1.0.0[src]

fn description(&self) -> &str

👎 Deprecated since 1.42.0:

use the Display impl or to_string()

1.0.0[src]

fn cause(&self) -> Option<&dyn Error>

👎 Deprecated since 1.33.0:

replaced by Error::source, which can support downcasting

impl PartialEq<ParseError> for ParseError

fn eq(&self, other: &ParseError) -> bool

This method tests for self and other values to be equal, and is used by ==. Read more

fn ne(&self, other: &ParseError) -> bool

This method tests for !=.

impl Eq for ParseError

impl StructuralEq for ParseError

impl StructuralPartialEq for ParseError

Auto Trait Implementations

impl RefUnwindSafe for ParseError

impl Send for ParseError

impl Sync for ParseError

impl Unpin for ParseError

impl UnwindSafe for ParseError

Blanket Implementations

impl<T> Any for T where
T: 'static + ?Sized,

pub fn type_id(&self) -> TypeId

Gets the TypeId of self. Read more

impl<T> Borrow<T> for T where
T: ?Sized,

pub fn borrow(&self) -> &T

Immutably borrows from an owned value. Read more

impl<T> BorrowMut<T> for T where
T: ?Sized,

pub fn borrow_mut(&mut self) -> &mut T

Mutably borrows from an owned value. Read more

impl<Q, K> Equivalent<K> for Q where
Q: Eq + ?Sized,
K: Borrow<Q> + ?Sized,

pub fn equivalent(&self, key: &K) -> bool

Compare self to key and return true if they are equal.

impl<T> From<T> for T

pub fn from(t: T) -> T

Performs the conversion.

impl<T, U> Into<U> for T where
U: From<T>,

pub fn into(self) -> U

Performs the conversion.

impl<T> ToOwned for T where
T: Clone,

type Owned = T

The resulting type after obtaining ownership.

pub fn to_owned(&self) -> T

Creates owned data from borrowed data, usually by cloning. Read more

pub fn clone_into(&self, target: &mut T)

🔬 This is a nightly-only experimental API. (toowned_clone_into)

Uses borrowed data to replace owned data, usually by cloning. Read more

impl<T> ToString for T where
T: Display + ?Sized,

pub default fn to_string(&self) -> String

Converts the given value to a String. Read more

impl<T, U> TryFrom<U> for T where
U: Into<T>,

type Error = Infallible

The type returned in the event of a conversion error.

pub fn try_from(value: U) -> Result<T, <T as TryFrom<U>>::Error>

Performs the conversion.

impl<T, U> TryInto<U> for T where
U: TryFrom<T>,

type Error = <U as TryFrom<T>>::Error

The type returned in the event of a conversion error.

pub fn try_into(self) -> Result<U, <U as TryFrom<T>>::Error>

Performs the conversion.