Enum noodles_vcf::header::format::key::Key

source · [−]

pub enum Key {
Show 24 variants    ReadDepths,
    ForwardStrandReadDepths,
    ReverseStrandReadDepths,
    ReadDepth,
    ExpectedAlternateAlleleCounts,
    Filter,
    GenotypeLikelihoods,
    GenotypePosteriorProbabilities,
    ConditionalGenotypeQuality,
    Genotype,
    HaplotypeQuality,
    MappingQuality,
    RoundedGenotypeLikelihoods,
    RoundedGenotypePosteriorProbabilities,
    PhasingQuality,
    PhaseSet,
    GenotypeCopyNumber,
    GenotypeCopyNumberQuality,
    GenotypeCopyNumberLikelihoods,
    GenotypeCopyNumberPosteriorProbabilities,
    NovelVariantQualityScore,
    HaplotypeId,
    AncestralHaplotypeId,
    Other(String),
}

Expand description

A VCF header format key.

Variants

`ReadDepths`

Read depth for each allele (AD).

`ForwardStrandReadDepths`

Read depth for each allele on the forward strand (ADF).

`ReverseStrandReadDepths`

Read depth for each allele on the reverse strand (ADR).

`ReadDepth`

Read depth (DP).

`ExpectedAlternateAlleleCounts`

Expected alternate allele counts (EC).

`Filter`

Filter indicating if this genotype was “called” (FT).

`GenotypeLikelihoods`

Genotype likelihoods (GL).

`GenotypePosteriorProbabilities`

Genotype posterior probabilities (GP).

`ConditionalGenotypeQuality`

Conditional genotype quality (GQ).

`Genotype`

Genotype (GT).

`HaplotypeQuality`

Haplotype quality (HQ).

`MappingQuality`

RMS mapping quality (MQ).

`RoundedGenotypeLikelihoods`

Phred-scaled genotype likelihoods rounded to the closest integer (PL).

`RoundedGenotypePosteriorProbabilities`

Phred-scaled genotype posterior probabilities rounded to the closest integer (PP).

`PhasingQuality`

Phasing quality (PQ).

`PhaseSet`

Phase set (PS).

`GenotypeCopyNumber`

Copy number genotype for imprecise events (CN).

`GenotypeCopyNumberQuality`

Copy number genotype quality for imprecise events (CNQ).

`GenotypeCopyNumberLikelihoods`

Copy number genotype likelihood for imprecise events (CNL).

`GenotypeCopyNumberPosteriorProbabilities`

Copy number posterior probabilities (CNP).

`NovelVariantQualityScore`

Phred style probability score that the variant is novel (NQ).

`HaplotypeId`

Unique haplotype identifier (HAP).

`AncestralHaplotypeId`

Unique identifier of ancestral haplotype (AHAP).

`Other(String)`

Any other non-reserved key.

Trait Implementations

impl AsRef<str> for Key

fn as_ref(&self) -> &str

Converts this type into a shared reference of the (usually inferred) input type.

impl Clone for Key

fn clone(&self) -> Key

Returns a copy of the value. Read more

1.0.0 · source

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source. Read more

impl Debug for Key

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter. Read more

impl Display for Key

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter. Read more

impl From<Key> for Format

fn from(key: Key) -> Self

Converts to this type from the input type.

impl FromStr for Key

type Err = ParseError

The associated error which can be returned from parsing.

fn from_str(s: &str) -> Result<Self, Self::Err>

Parses a string s to return a value of this type. Read more

impl Hash for Key

fn hash<H: Hasher>(&self, state: &mut H)

Feeds this value into the given Hasher. Read more

1.3.0 · source

fn hash_slice<H>(data: &[Self], state: &mut H) where
H: Hasher,

Feeds a slice of this type into the given Hasher. Read more

impl PartialEq<Key> for Key

fn eq(&self, other: &Key) -> bool

This method tests for self and other values to be equal, and is used by ==. Read more

fn ne(&self, other: &Key) -> bool

This method tests for !=.

impl Eq for Key

impl StructuralEq for Key

impl StructuralPartialEq for Key

Auto Trait Implementations

impl RefUnwindSafe for Key

impl Send for Key

impl Sync for Key

impl Unpin for Key

impl UnwindSafe for Key

Blanket Implementations

impl<T> Any for T where
T: 'static + ?Sized,

fn type_id(&self) -> TypeId

Gets the TypeId of self. Read more

impl<T> Borrow<T> for T where
T: ?Sized,

const: unstable · source

fn borrow(&self) -> &T

Immutably borrows from an owned value. Read more

impl<T> BorrowMut<T> for T where
T: ?Sized,

const: unstable · source

fn borrow_mut(&mut self) -> &mut T

Mutably borrows from an owned value. Read more

impl<Q, K> Equivalent<K> for Q where
Q: Eq + ?Sized,
K: Borrow<Q> + ?Sized,

fn equivalent(&self, key: &K) -> bool

Compare self to key and return true if they are equal.

impl<T> From<T> for T

const: unstable · source

fn from(t: T) -> T

Returns the argument unchanged.

impl<T> Instrument for T

fn instrument(self, span: Span) -> Instrumented<Self>

Instruments this type with the provided Span, returning an Instrumented wrapper. Read more

fn in_current_span(self) -> Instrumented<Self>

Instruments this type with the current Span, returning an Instrumented wrapper. Read more

impl<T, U> Into<U> for T where
U: From<T>,

const: unstable · source

fn into(self) -> U

Calls U::from(self).

That is, this conversion is whatever the implementation of From<T> for U chooses to do.

impl<T> ToOwned for T where
T: Clone,

type Owned = T

The resulting type after obtaining ownership.

fn to_owned(&self) -> T

Creates owned data from borrowed data, usually by cloning. Read more

fn clone_into(&self, target: &mut T)

Uses borrowed data to replace owned data, usually by cloning. Read more

impl<T> ToString for T where
T: Display + ?Sized,

default fn to_string(&self) -> String

Converts the given value to a String. Read more

impl<T, U> TryFrom<U> for T where
U: Into<T>,

type Error = Infallible

The type returned in the event of a conversion error.

const: unstable · source

fn try_from(value: U) -> Result<T, <T as TryFrom<U>>::Error>

Performs the conversion.

impl<T, U> TryInto<U> for T where
U: TryFrom<T>,

type Error = <U as TryFrom<T>>::Error

The type returned in the event of a conversion error.

const: unstable · source

fn try_into(self) -> Result<U, <U as TryFrom<T>>::Error>

Performs the conversion.

impl<T> WithSubscriber for T

fn with_subscriber<S>(self, subscriber: S) -> WithDispatch<Self> where
S: Into<Dispatch>,

Attaches the provided Subscriber to this type, returning a WithDispatch wrapper. Read more

fn with_current_subscriber(self) -> WithDispatch<Self>

Attaches the current default Subscriber to this type, returning a WithDispatch wrapper. Read more