Enum noodles_vcf::header::ParseError

source · [−]

pub enum ParseError {
Show 18 variants    MissingFileFormat,
    UnexpectedFileFormat,
    InvalidFileFormat(ParseError),
    InvalidRecord(ParseError),
    InvalidRecordValue,
    InvalidInfo(TryFromRecordError),
    InvalidFilter(TryFromRecordError),
    InvalidFormat(TryFromRecordError),
    InvalidAlternativeAllele(TryFromRecordError),
    InvalidContig(TryFromRecordError),
    InvalidMeta(TryFromRecordError),
    InvalidSample(TryFromRecordError),
    InvalidPedigree(TryFromRecordError),
    MissingHeader,
    InvalidHeader(String, String),
    DuplicateSampleName(String),
    ExpectedEof,
    StringMapPositionMismatch((usize, String), (usize, String)),
}

Expand description

An error returned when a raw VCF header fails to parse.

Variants

`MissingFileFormat`

The file format (fileformat) is missing.

`UnexpectedFileFormat`

The file format (fileformat) appears other than the first line.

`InvalidFileFormat(ParseError)`

The file format (fileformat) is invalid.

`InvalidRecord(ParseError)`

A record is invalid.

`InvalidRecordValue`

A record has an invalid value.

`InvalidInfo(TryFromRecordError)`

An information record (INFO) is invalid.

`InvalidFilter(TryFromRecordError)`

A filter record (FILTER) is invalid.

`InvalidFormat(TryFromRecordError)`

A genotype format record (FORMAT) is invalid.

`InvalidAlternativeAllele(TryFromRecordError)`

A symboloic alternate allele record (ALT) is invalid.

`InvalidContig(TryFromRecordError)`

A contig record (contig) is invalid.

`InvalidMeta(TryFromRecordError)`

A meta record (META) is invalid.

`InvalidSample(TryFromRecordError)`

A sample record (SAMPLE) is invalid.

`InvalidPedigree(TryFromRecordError)`

A pedigree record (PEDIGREE) is invalid.

`MissingHeader`

The header is missing.

`InvalidHeader(String, String)`

The header is invalid.

`DuplicateSampleName(String)`

A sample name is duplicated.

§ 1.5 Header line syntax (2021-01-13): “Duplicate sample IDs are not allowed.”

`ExpectedEof`

More data unexpectedly appears after the header header (#CHROM…).

`StringMapPositionMismatch((usize, String), (usize, String))`

The position of the entry in the string match does not match the absolute position defined by the IDX field of a record.

Trait Implementations

impl Clone for ParseError

fn clone(&self) -> ParseError

Returns a copy of the value. Read more

1.0.0 · source

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source. Read more

impl Debug for ParseError

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter. Read more

impl Display for ParseError

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter. Read more

impl Error for ParseError

1.30.0 · source

fn source(&self) -> Option<&(dyn Error + 'static)>

The lower-level source of this error, if any. Read more

fn backtrace(&self) -> Option<&Backtrace>

🔬 This is a nightly-only experimental API. (backtrace)

Returns a stack backtrace, if available, of where this error occurred. Read more

1.0.0 · source

fn description(&self) -> &str

👎 Deprecated since 1.42.0:

use the Display impl or to_string()

1.0.0 · source

fn cause(&self) -> Option<&dyn Error>

👎 Deprecated since 1.33.0:

replaced by Error::source, which can support downcasting

impl PartialEq<ParseError> for ParseError

fn eq(&self, other: &ParseError) -> bool

This method tests for self and other values to be equal, and is used by ==. Read more

fn ne(&self, other: &ParseError) -> bool

This method tests for !=.

impl Eq for ParseError

impl StructuralEq for ParseError

impl StructuralPartialEq for ParseError

Auto Trait Implementations

impl RefUnwindSafe for ParseError

impl Send for ParseError

impl Sync for ParseError

impl Unpin for ParseError

impl UnwindSafe for ParseError

Blanket Implementations

impl<T> Any for T where
T: 'static + ?Sized,

fn type_id(&self) -> TypeId

Gets the TypeId of self. Read more

impl<T> Borrow<T> for T where
T: ?Sized,

const: unstable · source

fn borrow(&self) -> &T

Immutably borrows from an owned value. Read more

impl<T> BorrowMut<T> for T where
T: ?Sized,

const: unstable · source

fn borrow_mut(&mut self) -> &mut T

Mutably borrows from an owned value. Read more

impl<Q, K> Equivalent<K> for Q where
Q: Eq + ?Sized,
K: Borrow<Q> + ?Sized,

fn equivalent(&self, key: &K) -> bool

Compare self to key and return true if they are equal.

impl<T> From<T> for T

const: unstable · source

fn from(t: T) -> T

Returns the argument unchanged.

impl<T> Instrument for T

fn instrument(self, span: Span) -> Instrumented<Self>

Instruments this type with the provided Span, returning an Instrumented wrapper. Read more

fn in_current_span(self) -> Instrumented<Self>

Instruments this type with the current Span, returning an Instrumented wrapper. Read more

impl<T, U> Into<U> for T where
U: From<T>,

const: unstable · source

fn into(self) -> U

Calls U::from(self).

That is, this conversion is whatever the implementation of From<T> for U chooses to do.

impl<T> ToOwned for T where
T: Clone,

type Owned = T

The resulting type after obtaining ownership.

fn to_owned(&self) -> T

Creates owned data from borrowed data, usually by cloning. Read more

fn clone_into(&self, target: &mut T)

Uses borrowed data to replace owned data, usually by cloning. Read more

impl<T> ToString for T where
T: Display + ?Sized,

default fn to_string(&self) -> String

Converts the given value to a String. Read more

impl<T, U> TryFrom<U> for T where
U: Into<T>,

type Error = Infallible

The type returned in the event of a conversion error.

const: unstable · source

fn try_from(value: U) -> Result<T, <T as TryFrom<U>>::Error>

Performs the conversion.

impl<T, U> TryInto<U> for T where
U: TryFrom<T>,

type Error = <U as TryFrom<T>>::Error

The type returned in the event of a conversion error.

const: unstable · source

fn try_into(self) -> Result<U, <U as TryFrom<T>>::Error>

Performs the conversion.

impl<T> WithSubscriber for T

fn with_subscriber<S>(self, subscriber: S) -> WithDispatch<Self> where
S: Into<Dispatch>,

Attaches the provided Subscriber to this type, returning a WithDispatch wrapper. Read more

fn with_current_subscriber(self) -> WithDispatch<Self>

Attaches the current default Subscriber to this type, returning a WithDispatch wrapper. Read more