Struct noodles_vcf::header::filter::Filter

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pub struct Filter { /* private fields */ }

Expand description

A VCF header filter record (FILTER).

Implementations

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impl Filter

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pub fn pass() -> Self

Creates a default filter record for PASS.

Examples

use noodles_vcf::header::Filter;
let filter = Filter::pass();
assert_eq!(filter, Filter::new("PASS", "All filters passed"));

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pub fn new<S, T>(id: S, description: T) -> Self where
S: Into<String>,
T: Into<String>,

Creates a VCF header filter record.

Examples

use noodles_vcf::header::Filter;
let filter = Filter::new("q10", "Quality below 10");

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pub fn id(&self) -> &str

Returns the ID of the filter.

Examples

use noodles_vcf::header::Filter;
let filter = Filter::new("q10", "Quality below 10");
assert_eq!(filter.id(), "q10");

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pub fn description(&self) -> &str

Returns the description of the filter.

Examples

use noodles_vcf::header::Filter;
let filter = Filter::new("q10", "Quality below 10");
assert_eq!(filter.description(), "Quality below 10");

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pub fn idx(&self) -> Option<usize>

Returns the index of the ID in the dictionary of strings.

This is typically used in BCF.

Examples

use noodles_vcf::header::Filter;
let filter = Filter::new("q10", "Quality below 10");
assert!(filter.idx().is_none());

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pub fn fields(&self) -> &IndexMap<String, String>

Returns the extra fields in the record.

This includes fields other than ID and Description.

Examples

use noodles_vcf::header::Filter;
let filter = Filter::new("q10", "Quality below 10");
assert!(filter.fields().is_empty());

Trait Implementations

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impl Clone for Filter

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fn clone(&self) -> Filter

Returns a copy of the value. Read more

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fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source. Read more

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impl Debug for Filter

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fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter. Read more

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impl Display for Filter

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fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter. Read more

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impl PartialEq<Filter> for Filter

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fn eq(&self, other: &Filter) -> bool

This method tests for self and other values to be equal, and is used by ==. Read more

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fn ne(&self, other: &Filter) -> bool

This method tests for !=.

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impl TryFrom<Record> for Filter

type Error = TryFromRecordError

The type returned in the event of a conversion error.

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fn try_from(record: Record) -> Result<Self, Self::Error>

Performs the conversion.

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impl Eq for Filter

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impl StructuralEq for Filter

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impl StructuralPartialEq for Filter

Auto Trait Implementations

impl RefUnwindSafe for Filter

impl Send for Filter

impl Sync for Filter

impl Unpin for Filter

impl UnwindSafe for Filter

Blanket Implementations

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impl<T> Any for T where
T: 'static + ?Sized,

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fn type_id(&self) -> TypeId

Gets the TypeId of self. Read more

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impl<T> Borrow<T> for T where
T: ?Sized,

const: unstable · source

fn borrow(&self) -> &T

Immutably borrows from an owned value. Read more

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impl<T> BorrowMut<T> for T where
T: ?Sized,

const: unstable · source

fn borrow_mut(&mut self) -> &mut T

Mutably borrows from an owned value. Read more

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impl<Q, K> Equivalent<K> for Q where
Q: Eq + ?Sized,
K: Borrow<Q> + ?Sized,

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fn equivalent(&self, key: &K) -> bool

Compare self to key and return true if they are equal.

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impl<T> From<T> for T

const: unstable · source

fn from(t: T) -> T

Returns the argument unchanged.

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impl<T> Instrument for T

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fn instrument(self, span: Span) -> Instrumented<Self>

Instruments this type with the provided Span, returning an Instrumented wrapper. Read more

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fn in_current_span(self) -> Instrumented<Self>

Instruments this type with the current Span, returning an Instrumented wrapper. Read more

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impl<T, U> Into for T where
U: From<T>,

const: unstable · source

fn into(self) -> U

Calls U::from(self).

That is, this conversion is whatever the implementation of From<T> for U chooses to do.

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impl<T> ToOwned for T where
T: Clone,

type Owned = T

The resulting type after obtaining ownership.

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fn to_owned(&self) -> T

Creates owned data from borrowed data, usually by cloning. Read more

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fn clone_into(&self, target: &mut T)

Uses borrowed data to replace owned data, usually by cloning. Read more

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impl<T> ToString for T where
T: Display + ?Sized,

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default fn to_string(&self) -> String

Converts the given value to a String. Read more

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impl<T, U> TryFrom for T where
U: Into<T>,

type Error = Infallible

The type returned in the event of a conversion error.

const: unstable · source

fn try_from(value: U) -> Result<T, <T as TryFrom>::Error>

Performs the conversion.

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impl<T, U> TryInto for T where
U: TryFrom<T>,

type Error = >::Error

The type returned in the event of a conversion error.

const: unstable · source

fn try_into(self) -> Result<U, >::Error>

Performs the conversion.

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impl<T> WithSubscriber for T

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fn with_subscriber<S>(self, subscriber: S) -> WithDispatch<Self> where
S: Into<Dispatch>,

Attaches the provided Subscriber to this type, returning a WithDispatch wrapper. Read more

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fn with_current_subscriber(self) -> WithDispatch<Self>

Attaches the current default Subscriber to this type, returning a WithDispatch wrapper. Read more

Struct noodles_vcf::header::filter::Filter

Implementations

impl Filter

pub fn pass() -> Self

pub fn new<S, T>(id: S, description: T) -> Self where S: Into<String>, T: Into<String>,

pub fn id(&self) -> &str

pub fn description(&self) -> &str

pub fn idx(&self) -> Option<usize>

pub fn fields(&self) -> &IndexMap<String, String>

Trait Implementations

impl Clone for Filter

fn clone(&self) -> Filter

fn clone_from(&mut self, source: &Self)

impl Debug for Filter

fn fmt(&self, f: &mut Formatter<'_>) -> Result

impl Display for Filter

fn fmt(&self, f: &mut Formatter<'_>) -> Result

impl PartialEq<Filter> for Filter

fn eq(&self, other: &Filter) -> bool

fn ne(&self, other: &Filter) -> bool

impl TryFrom<Record> for Filter

type Error = TryFromRecordError

fn try_from(record: Record) -> Result<Self, Self::Error>

impl Eq for Filter

impl StructuralEq for Filter

impl StructuralPartialEq for Filter

Auto Trait Implementations

impl RefUnwindSafe for Filter

impl Send for Filter

impl Sync for Filter

impl Unpin for Filter

impl UnwindSafe for Filter

Blanket Implementations

impl<T> Any for T where T: 'static + ?Sized,

fn type_id(&self) -> TypeId

impl<T> Borrow<T> for T where T: ?Sized,

fn borrow(&self) -> &T

impl<T> BorrowMut<T> for T where T: ?Sized,

fn borrow_mut(&mut self) -> &mut T

impl<Q, K> Equivalent<K> for Q where Q: Eq + ?Sized, K: Borrow<Q> + ?Sized,

fn equivalent(&self, key: &K) -> bool

impl<T> From<T> for T

fn from(t: T) -> T

impl<T> Instrument for T

fn instrument(self, span: Span) -> Instrumented<Self>

fn in_current_span(self) -> Instrumented<Self>

impl<T, U> Into<U> for T where U: From<T>,

fn into(self) -> U

impl<T> ToOwned for T where T: Clone,

type Owned = T

fn to_owned(&self) -> T

fn clone_into(&self, target: &mut T)

impl<T> ToString for T where T: Display + ?Sized,

default fn to_string(&self) -> String

impl<T, U> TryFrom<U> for T where U: Into<T>,

type Error = Infallible

fn try_from(value: U) -> Result<T, <T as TryFrom<U>>::Error>

impl<T, U> TryInto<U> for T where U: TryFrom<T>,

type Error = <U as TryFrom<T>>::Error

fn try_into(self) -> Result<U, <U as TryFrom<T>>::Error>

impl<T> WithSubscriber for T

fn with_subscriber<S>(self, subscriber: S) -> WithDispatch<Self> where S: Into<Dispatch>,

fn with_current_subscriber(self) -> WithDispatch<Self>

pub fn new<S, T>(id: S, description: T) -> Self where
S: Into<String>,
T: Into<String>,

impl<T> Any for T where
T: 'static + ?Sized,

impl<T> Borrow<T> for T where
T: ?Sized,

impl<T> BorrowMut<T> for T where
T: ?Sized,

impl<Q, K> Equivalent<K> for Q where
Q: Eq + ?Sized,
K: Borrow<Q> + ?Sized,

impl<T, U> Into<U> for T where
U: From<T>,

impl<T> ToOwned for T where
T: Clone,

impl<T> ToString for T where
T: Display + ?Sized,

impl<T, U> TryFrom<U> for T where
U: Into<T>,

impl<T, U> TryInto<U> for T where
U: TryFrom<T>,

fn with_subscriber<S>(self, subscriber: S) -> WithDispatch<Self> where
S: Into<Dispatch>,