Struct noodles_vcf::header::info::Info

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pub struct Info { /* private fields */ }

Expand description

A VCF header information record (INFO).

Implementations

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impl Info

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pub fn try_from_record_file_format(
record: Record,
file_format: FileFormat
) -> Result<Self, TryFromRecordError>

Converts a generic VCF header record to a VCF header info record.

Examples

use noodles_vcf::header::{
    info::{Key as InfoKey, Type},
    record::{Key as RecordKey, Value},
    FileFormat, Info, Number, Record,
};

let record = Record::new(
    RecordKey::Info,
    Value::Struct(vec![
        (String::from("ID"), String::from("NS")),
        (String::from("Number"), String::from("1")),
        (String::from("Type"), String::from("Integer")),
        (
            String::from("Description"),
            String::from("Number of samples with data"),
        ),
    ]),
);

assert_eq!(
    Info::try_from_record_file_format(record, FileFormat::new(4, 3)),
    Ok(Info::new(
        InfoKey::SamplesWithDataCount,
        Number::Count(1),
        Type::Integer,
        String::from("Number of samples with data"),
    ))
);

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pub fn new(id: Key, number: Number, ty: Type, description: String) -> Self

Creates a VCF header information record.

Examples

use noodles_vcf::header::{info::{Key, Type}, Info, Number};

let info = Info::new(
    Key::SamplesWithDataCount,
    Number::Count(1),
    Type::Integer,
    String::from("Number of samples with data"),
);

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pub fn id(&self) -> &Key

Returns the information field key.

Examples

use noodles_vcf::header::{info::Key, Info};
let info = Info::from(Key::SamplesWithDataCount);
assert_eq!(info.id(), &Key::SamplesWithDataCount);

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pub fn number(&self) -> Number

Returns the cardinality of the information field value.

Examples

use noodles_vcf::header::{info::Key, Info, Number};
let info = Info::from(Key::SamplesWithDataCount);
assert_eq!(info.number(), Number::Count(1));

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pub fn ty(&self) -> Type

Returns the type of the information field value.

Examples

use noodles_vcf::header::{info::{Key, Type}, Info};
let info = Info::from(Key::SamplesWithDataCount);
assert_eq!(info.ty(), Type::Integer);

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pub fn description(&self) -> &str

Returns the description of the information field.

Examples

use noodles_vcf::header::{info::Key, Info};
let info = Info::from(Key::SamplesWithDataCount);
assert_eq!(info.description(), "Number of samples with data");

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pub fn idx(&self) -> Option<usize>

Returns the index of the ID in the dictionary of strings.

This is typically used in BCF.

Examples

use noodles_vcf::header::{info::Key, Info};
let info = Info::from(Key::SamplesWithDataCount);
assert!(info.idx().is_none());

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pub fn fields(&self) -> &IndexMap<String, String>

Returns the extra fields in the record.

This includes fields other than ID, Number, Type, Description, and IDX.

Examples

use noodles_vcf::header::{info::Key, Info};
let info = Info::from(Key::SamplesWithDataCount);
assert!(info.fields().is_empty());

Trait Implementations

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impl Clone for Info

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fn clone(&self) -> Info

Returns a copy of the value. Read more

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fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source. Read more

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impl Debug for Info

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fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter. Read more

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impl Display for Info

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fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter. Read more

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impl From<Key> for Info

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fn from(key: Key) -> Self

Converts to this type from the input type.

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impl PartialEq<Info> for Info

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fn eq(&self, other: &Info) -> bool

This method tests for self and other values to be equal, and is used by ==. Read more

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fn ne(&self, other: &Info) -> bool

This method tests for !=.

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impl TryFrom<Record> for Info

type Error = TryFromRecordError

The type returned in the event of a conversion error.

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fn try_from(record: Record) -> Result<Self, Self::Error>

Performs the conversion.

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impl Eq for Info

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impl StructuralEq for Info

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impl StructuralPartialEq for Info

Auto Trait Implementations

impl RefUnwindSafe for Info

impl Send for Info

impl Sync for Info

impl Unpin for Info

impl UnwindSafe for Info

Blanket Implementations

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impl<T> Any for T where
T: 'static + ?Sized,

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fn type_id(&self) -> TypeId

Gets the TypeId of self. Read more

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impl<T> Borrow<T> for T where
T: ?Sized,

const: unstable · source

fn borrow(&self) -> &T

Immutably borrows from an owned value. Read more

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impl<T> BorrowMut<T> for T where
T: ?Sized,

const: unstable · source

fn borrow_mut(&mut self) -> &mut T

Mutably borrows from an owned value. Read more

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impl<Q, K> Equivalent<K> for Q where
Q: Eq + ?Sized,
K: Borrow<Q> + ?Sized,

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fn equivalent(&self, key: &K) -> bool

Compare self to key and return true if they are equal.

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impl<T> From<T> for T

const: unstable · source

fn from(t: T) -> T

Returns the argument unchanged.

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impl<T> Instrument for T

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fn instrument(self, span: Span) -> Instrumented<Self>

Instruments this type with the provided Span, returning an Instrumented wrapper. Read more

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fn in_current_span(self) -> Instrumented<Self>

Instruments this type with the current Span, returning an Instrumented wrapper. Read more

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impl<T, U> Into for T where
U: From<T>,

const: unstable · source

fn into(self) -> U

Calls U::from(self).

That is, this conversion is whatever the implementation of From<T> for U chooses to do.

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impl<T> ToOwned for T where
T: Clone,

type Owned = T

The resulting type after obtaining ownership.

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fn to_owned(&self) -> T

Creates owned data from borrowed data, usually by cloning. Read more

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fn clone_into(&self, target: &mut T)

Uses borrowed data to replace owned data, usually by cloning. Read more

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impl<T> ToString for T where
T: Display + ?Sized,

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default fn to_string(&self) -> String

Converts the given value to a String. Read more

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impl<T, U> TryFrom for T where
U: Into<T>,

type Error = Infallible

The type returned in the event of a conversion error.

const: unstable · source

fn try_from(value: U) -> Result<T, <T as TryFrom>::Error>

Performs the conversion.

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impl<T, U> TryInto for T where
U: TryFrom<T>,

type Error = >::Error

The type returned in the event of a conversion error.

const: unstable · source

fn try_into(self) -> Result<U, >::Error>

Performs the conversion.

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impl<T> WithSubscriber for T

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fn with_subscriber<S>(self, subscriber: S) -> WithDispatch<Self> where
S: Into<Dispatch>,

Attaches the provided Subscriber to this type, returning a WithDispatch wrapper. Read more

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fn with_current_subscriber(self) -> WithDispatch<Self>

Attaches the current default Subscriber to this type, returning a WithDispatch wrapper. Read more

Struct noodles_vcf::header::info::Info

Implementations

impl Info

pub fn try_from_record_file_format( record: Record, file_format: FileFormat) -> Result<Self, TryFromRecordError>

pub fn new(id: Key, number: Number, ty: Type, description: String) -> Self

pub fn id(&self) -> &Key

pub fn number(&self) -> Number

pub fn ty(&self) -> Type

pub fn description(&self) -> &str

pub fn idx(&self) -> Option<usize>

pub fn fields(&self) -> &IndexMap<String, String>

Trait Implementations

impl Clone for Info

fn clone(&self) -> Info

fn clone_from(&mut self, source: &Self)

impl Debug for Info

fn fmt(&self, f: &mut Formatter<'_>) -> Result

impl Display for Info

fn fmt(&self, f: &mut Formatter<'_>) -> Result

impl From<Key> for Info

fn from(key: Key) -> Self

impl PartialEq<Info> for Info

fn eq(&self, other: &Info) -> bool

fn ne(&self, other: &Info) -> bool

impl TryFrom<Record> for Info

type Error = TryFromRecordError

fn try_from(record: Record) -> Result<Self, Self::Error>

impl Eq for Info

impl StructuralEq for Info

impl StructuralPartialEq for Info

Auto Trait Implementations

impl RefUnwindSafe for Info

impl Send for Info

impl Sync for Info

impl Unpin for Info

impl UnwindSafe for Info

Blanket Implementations

impl<T> Any for T where T: 'static + ?Sized,

fn type_id(&self) -> TypeId

impl<T> Borrow<T> for T where T: ?Sized,

fn borrow(&self) -> &T

impl<T> BorrowMut<T> for T where T: ?Sized,

fn borrow_mut(&mut self) -> &mut T

impl<Q, K> Equivalent<K> for Q where Q: Eq + ?Sized, K: Borrow<Q> + ?Sized,

fn equivalent(&self, key: &K) -> bool

impl<T> From<T> for T

fn from(t: T) -> T

impl<T> Instrument for T

fn instrument(self, span: Span) -> Instrumented<Self>

fn in_current_span(self) -> Instrumented<Self>

impl<T, U> Into<U> for T where U: From<T>,

fn into(self) -> U

impl<T> ToOwned for T where T: Clone,

type Owned = T

fn to_owned(&self) -> T

fn clone_into(&self, target: &mut T)

impl<T> ToString for T where T: Display + ?Sized,

default fn to_string(&self) -> String

impl<T, U> TryFrom<U> for T where U: Into<T>,

type Error = Infallible

fn try_from(value: U) -> Result<T, <T as TryFrom<U>>::Error>

impl<T, U> TryInto<U> for T where U: TryFrom<T>,

type Error = <U as TryFrom<T>>::Error

fn try_into(self) -> Result<U, <U as TryFrom<T>>::Error>

impl<T> WithSubscriber for T

fn with_subscriber<S>(self, subscriber: S) -> WithDispatch<Self> where S: Into<Dispatch>,

fn with_current_subscriber(self) -> WithDispatch<Self>

pub fn try_from_record_file_format(
record: Record,
file_format: FileFormat
) -> Result<Self, TryFromRecordError>

impl<T> Any for T where
T: 'static + ?Sized,

impl<T> Borrow<T> for T where
T: ?Sized,

impl<T> BorrowMut<T> for T where
T: ?Sized,

impl<Q, K> Equivalent<K> for Q where
Q: Eq + ?Sized,
K: Borrow<Q> + ?Sized,

impl<T, U> Into<U> for T where
U: From<T>,

impl<T> ToOwned for T where
T: Clone,

impl<T> ToString for T where
T: Display + ?Sized,

impl<T, U> TryFrom<U> for T where
U: Into<T>,

impl<T, U> TryInto<U> for T where
U: TryFrom<T>,

fn with_subscriber<S>(self, subscriber: S) -> WithDispatch<Self> where
S: Into<Dispatch>,