Enum noodles_vcf::header::format::key::Key

pub enum Key {
    ReadDepths,
    ForwardStrandReadDepths,
    ReverseStrandReadDepths,
    ReadDepth,
    ExpectedAlternateAlleleCounts,
    Filter,
    GenotypeLikelihoods,
    GenotypePosteriorProbabilities,
    ConditionalGenotypeQuality,
    Genotype,
    HaplotypeQuality,
    MappingQuality,
    RoundedGenotypeLikelihoods,
    RoundedGenotypePosteriorProbabilities,
    PhasingQuality,
    PhaseSet,
    GenotypeCopyNumber,
    GenotypeCopyNumberQuality,
    GenotypeCopyNumberLikelihoods,
    GenotypeCopyNumberPosteriorProbabilities,
    NovelVariantQualityScore,
    HaplotypeId,
    AncestralHaplotypeId,
    Other(String),
}

A VCF header format key.

Variants

ReadDepths

Read depth for each allele (AD).

ForwardStrandReadDepths

Read depth for each allele on the forward strand (ADF).

ReverseStrandReadDepths

Read depth for each allele on the reverse strand (ADR).

ReadDepth

Read depth (DP).

ExpectedAlternateAlleleCounts

Expected alternate allele counts (EC).

Filter

Filter indicating if this genotype was “called” (FT).

GenotypeLikelihoods

Genotype likelihoods (GL).

GenotypePosteriorProbabilities

Genotype posterior probabilities (GP).

ConditionalGenotypeQuality

Conditional genotype quality (GQ).

Genotype

Genotype (GT).

HaplotypeQuality

Haplotype quality (HQ).

MappingQuality

RMS mapping quality (MQ).

RoundedGenotypeLikelihoods

Phred-scaled genotype likelihoods rounded to the closest integer (PL).

RoundedGenotypePosteriorProbabilities

Phred-scaled genotype posterior probabilities rounded to the closest integer (PP).

PhasingQuality

Phasing quality (PQ).

PhaseSet

Phase set (PS).

GenotypeCopyNumber

Copy number genotype for imprecise events (CN).

GenotypeCopyNumberQuality

Copy number genotype quality for imprecise events (CNQ).

GenotypeCopyNumberLikelihoods

Copy number genotype likelihood for imprecise events (CNL).

GenotypeCopyNumberPosteriorProbabilities

Copy number posterior probabilities (CNP).

NovelVariantQualityScore

Phred style probability score that the variant is novel (NQ).

HaplotypeId

Unique haplotype identifier (HAP).

AncestralHaplotypeId

Unique identifier of ancestral haplotype (AHAP).

Other(String)

Any other non-reserved key.

Trait Implementations

impl AsRef<str> for Key

fn as_ref(&self) -> &str

Converts this type into a shared reference of the (usually inferred) input type.

impl Clone for Key

fn clone(&self) -> Key

Returns a copy of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for Key

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Display for Key

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl From<Key> for Map<Format>

fn from(key: Key) -> Self

Converts to this type from the input type.

impl FromStr for Key

type Err = ParseError

The associated error which can be returned from parsing.

fn from_str(s: &str) -> Result<Self, Self::Err>

Parses a string s to return a value of this type.

impl Hash for Key

fn hash<__H: Hasher>(&self, state: &mut __H)

Feeds this value into the given Hasher.

fn hash_slice<H>(data: &[Self], state: &mut H)where
    H: Hasher,
    Self: Sized,

Feeds a slice of this type into the given Hasher.

impl PartialEq<Key> for Key

fn eq(&self, other: &Key) -> bool

This method tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

This method tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl Eq for Key

impl StructuralEq for Key

impl StructuralPartialEq for Key