Enum noodles_vcf::header::info::key::Key

pub enum Key {
    AncestralAllele,
    AlleleCount,
    TotalReadDepths,
    ForwardStrandReadDepths,
    ReverseStrandReadDepths,
    AlleleFrequencies,
    TotalAlleleCount,
    BaseQuality,
    Cigar,
    IsInDbSnp,
    TotalDepth,
    IsInHapMap2,
    IsInHapMap3,
    MappingQuality,
    ZeroMappingQualityCount,
    SamplesWithDataCount,
    StrandBias,
    IsSomaticMutation,
    IsValidated,
    IsIn1000Genomes,
    IsImprecise,
    IsNovel,
    EndPosition,
    SvType,
    SvLengths,
    PositionConfidenceIntervals,
    EndConfidenceIntervals,
    MicrohomologyLengths,
    MicrohomologySequences,
    BreakpointIds,
    MobileElementInfo,
    MobileElementTransductionInfo,
    DbvId,
    DbVarId,
    DbRipId,
    MateBreakendIds,
    PartnerBreakendId,
    BreakendEventId,
    BreakendConfidenceIntervals,
    AdjacentReadDepths,
    BreakendCopyNumber,
    AdjacentCopyNumber,
    CopyNumberConfidenceIntervals,
    AdjacentCopyNumberConfidenceIntervals,
    Other(String),
}

A VCF header info key.

Variants

AncestralAllele

Ancestral allele (AA).

AlleleCount

Allele count in genotypes, for each ALT allele, in the same order as listed (AC).

TotalReadDepths

Total read depth for each allele (AD).

ForwardStrandReadDepths

Read depth for each allele on the forward strand (ADF).

ReverseStrandReadDepths

Read depth for each allele on the reverse strand (ADR).

AlleleFrequencies

Allele frequency for each ALT allele in the same order as listed (AF).

TotalAlleleCount

Total number of alleles in called genotypes (AN).

BaseQuality

RMS base quality (BQ).

Cigar

Cigar string describing how to align an alternate allele to the reference allele (CIGAR).

IsInDbSnp

dbSNP membership (DB).

TotalDepth

Combined depth across samples (DP).

IsInHapMap2

HapMap2 membership (H2).

IsInHapMap3

HapMap3 membership (H3).

MappingQuality

RMS mapping quality (MQ).

ZeroMappingQualityCount

Number of MAPQ == 0 reads (MQ0).

SamplesWithDataCount

Number of samples with data (NS).

StrandBias

Strand bias (SB).

IsSomaticMutation

Somatic mutation (SOMATIC).

IsValidated

Validated by follow-up experiment (VALIDATED).

IsIn1000Genomes

1000 Genomes membership (1000G).

IsImprecise

Imprecise structural variation (IMPRECISE).

IsNovel

Indicates a novel structural variation (NOVEL).

EndPosition

End position of the variant described in this record (END).

SvType

Type of structural variant (SVTYPE).

SvLengths

Difference in length between REF and ALT alleles (SVLEN).

PositionConfidenceIntervals

Confidence interval around POS for imprecise variants (CIPOS).

EndConfidenceIntervals

Confidence interval around END for imprecise variants (CIEND).

MicrohomologyLengths

Length of base pair identical micro-homology at event breakpoints (HOMLEN).

MicrohomologySequences

Sequence of base pair identical micro-homology at event breakpoints (HOMSEQ).

BreakpointIds

ID of the assembled alternate allele in the assembly file (BKPTID).

MobileElementInfo

Mobile element info of the form NAME,START,END,POLARITY (MEINFO).

MobileElementTransductionInfo

Mobile element transduction info of the form CHR,START,END,POLARITY (METRANS).

DbvId

ID of this element in Database of Genomic Variation (DBVID).

DbVarId

ID of this element in DBVAR (DBVARID).

DbRipId

ID of this element in DBRIP (DBRIPID).

MateBreakendIds

ID of mate breakends (MATEID).

PartnerBreakendId

ID of partner breakend (PARID).

BreakendEventId

ID of event associated to breakend (EVENT).

BreakendConfidenceIntervals

Confidence interval around the inserted material between breakends (CILEN).

AdjacentReadDepths

Read Depth of adjacency (DPADJ).

BreakendCopyNumber

Copy number of segment containing breakend (CN).

AdjacentCopyNumber

Copy number of adjacency (CNADJ).

CopyNumberConfidenceIntervals

Confidence interval around copy number for the segment (CICN).

AdjacentCopyNumberConfidenceIntervals

Confidence interval around copy number for the adjacency (CICNADJ).

Other(String)

Any other non-reserved key.

Trait Implementations

impl AsRef<str> for Key

fn as_ref(&self) -> &str

Converts this type into a shared reference of the (usually inferred) input type.

impl Clone for Key

fn clone(&self) -> Key

Returns a copy of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for Key

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Display for Key

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl From<&Key> for Map<Info>

fn from(key: &Key) -> Self

Converts to this type from the input type.

impl FromStr for Key

type Err = ParseError

The associated error which can be returned from parsing.

fn from_str(s: &str) -> Result<Self, Self::Err>

Parses a string s to return a value of this type.

impl Hash for Key

fn hash<__H: Hasher>(&self, state: &mut __H)

Feeds this value into the given Hasher.

fn hash_slice<H>(data: &[Self], state: &mut H)where
    H: Hasher,
    Self: Sized,

Feeds a slice of this type into the given Hasher.

impl PartialEq<Key> for Key

fn eq(&self, other: &Key) -> bool

This method tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

This method tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl Eq for Key

impl StructuralEq for Key

impl StructuralPartialEq for Key