Enum noodles_vcf::header::format::key::Standard

pub enum Standard {
    ReadDepths,
    ForwardStrandReadDepths,
    ReverseStrandReadDepths,
    ReadDepth,
    ExpectedAlternateAlleleCounts,
    Filter,
    GenotypeLikelihoods,
    GenotypePosteriorProbabilities,
    ConditionalGenotypeQuality,
    Genotype,
    HaplotypeQuality,
    MappingQuality,
    RoundedGenotypeLikelihoods,
    RoundedGenotypePosteriorProbabilities,
    PhasingQuality,
    PhaseSet,
    PhaseSetList,
    PhaseSetListOrdinals,
    PhaseSetListQualities,
    GenotypeCopyNumber,
    CopyNumberConfidenceInterval,
    GenotypeCopyNumberQuality,
    GenotypeCopyNumberLikelihoods,
    GenotypeCopyNumberPosteriorProbabilities,
    NovelVariantQualityScore,
    HaplotypeId,
    AncestralHaplotypeId,
}

A reserved VCF header format key.

Variants

ReadDepths

Read depth for each allele (AD).

ForwardStrandReadDepths

Read depth for each allele on the forward strand (ADF).

ReverseStrandReadDepths

Read depth for each allele on the reverse strand (ADR).

ReadDepth

Read depth (DP).

ExpectedAlternateAlleleCounts

Expected alternate allele counts (EC).

Filter

Filter indicating if this genotype was “called” (FT).

GenotypeLikelihoods

Genotype likelihoods (GL).

GenotypePosteriorProbabilities

Genotype posterior probabilities (GP).

ConditionalGenotypeQuality

Conditional genotype quality (GQ).

Genotype

Genotype (GT).

HaplotypeQuality

Haplotype quality (HQ).

MappingQuality

RMS mapping quality (MQ).

RoundedGenotypeLikelihoods

Phred-scaled genotype likelihoods rounded to the closest integer (PL).

RoundedGenotypePosteriorProbabilities

Phred-scaled genotype posterior probabilities rounded to the closest integer (PP).

PhasingQuality

Phasing quality (PQ).

PhaseSet

Phase set (PS).

PhaseSetList

Phase set list (PSL).

Added in VCF 4.4.

PhaseSetListOrdinals

Phase set list ordinal (PSO).

Added in VCF 4.4.

PhaseSetListQualities

Phase set list quality (PSQ).

Added in VCF 4.4.

GenotypeCopyNumber

Copy number genotype for imprecise events (CN).

CopyNumberConfidenceInterval

Confidence interval around copy number (CICN).

Added in VCF 4.4.

GenotypeCopyNumberQuality

Copy number genotype quality for imprecise events (CNQ).

GenotypeCopyNumberLikelihoods

Copy number genotype likelihood for imprecise events (CNL).

GenotypeCopyNumberPosteriorProbabilities

Copy number posterior probabilities (CNP).

NovelVariantQualityScore

Phred style probability score that the variant is novel (NQ).

HaplotypeId

Unique haplotype identifier (HAP).

AncestralHaplotypeId

Unique identifier of ancestral haplotype (AHAP).

Trait Implementations

impl AsRef<str> for Standard

fn as_ref(&self) -> &str

Converts this type into a shared reference of the (usually inferred) input type.

impl Clone for Standard

fn clone(&self) -> Standard

Returns a copy of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for Standard

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl FromStr for Standard

type Err = ParseError

The associated error which can be returned from parsing.

fn from_str(s: &str) -> Result<Self, Self::Err>

Parses a string s to return a value of this type.

impl Hash for Standard

fn hash<__H: Hasher>(&self, state: &mut __H)

Feeds this value into the given Hasher.

fn hash_slice<H>(data: &[Self], state: &mut H)where H: Hasher, Self: Sized,

Feeds a slice of this type into the given Hasher.

impl PartialEq<Standard> for Standard

fn eq(&self, other: &Standard) -> bool

This method tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

This method tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl Copy for Standard

impl Eq for Standard

impl StructuralEq for Standard

impl StructuralPartialEq for Standard