List of all items

Structs

• async::io::Reader
• async::io::Writer
• header::Builder
• header::Header
• header::file_format::FileFormat
• header::parser::Builder
• header::parser::Parser
• header::record::key::other::Other
• header::record::value::map::Builder
• header::record::value::map::Map
• header::record::value::map::alternative_allele::AlternativeAllele
• header::record::value::map::contig::Contig
• header::record::value::map::filter::Filter
• header::record::value::map::format::Format
• header::record::value::map::info::Info
• header::record::value::map::other::Other
• header::string_maps::StringMap
• header::string_maps::StringMaps
• io::indexed_reader::Builder
• io::indexed_reader::IndexedReader
• io::reader::Builder
• io::reader::Query
• io::reader::Reader
• io::reader::RecordBufs
• io::writer::Builder
• io::writer::Writer
• record::AlternateBases
• record::Filters
• record::Ids
• record::Info
• record::Record
• record::samples::Keys
• record::samples::Sample
• record::samples::Samples
• record::samples::series::Series
• record::samples::series::value::Genotype
• variant::record_buf::AlternateBases
• variant::record_buf::Filters
• variant::record_buf::RecordBuf
• variant::record_buf::builder::Builder
• variant::record_buf::ids::Ids
• variant::record_buf::info::Info
• variant::record_buf::samples::Samples
• variant::record_buf::samples::Series
• variant::record_buf::samples::keys::Keys
• variant::record_buf::samples::sample::Sample
• variant::record_buf::samples::sample::value::genotype::Genotype
• variant::record_buf::samples::sample::value::genotype::allele::Allele

Enums

• header::parser::Entry
• header::parser::FileFormatOption
• header::parser::ParseError
• header::record::Record
• header::record::key::Key
• header::record::key::Standard
• header::record::key::other::ParseError
• header::record::value::Value
• header::record::value::collection::AddError
• header::record::value::collection::Collection
• header::record::value::map::format::Number
• header::record::value::map::format::Type
• header::record::value::map::info::Number
• header::record::value::map::info::Type
• io::CompressionMethod
• io::reader::record_buf::ParseError
• variant::record::info::field::value::Value
• variant::record::info::field::value::array::Array
• variant::record::samples::series::value::Value
• variant::record::samples::series::value::array::Array
• variant::record::samples::series::value::genotype::Phasing
• variant::record_buf::info::field::value::Array
• variant::record_buf::info::field::value::Value
• variant::record_buf::samples::sample::value::Array
• variant::record_buf::samples::sample::value::Value
• variant::record_buf::samples::sample::value::genotype::ParseError
• variant::record_buf::samples::sample::value::genotype::allele::ParseError

Traits

• header::record::value::map::Described
• header::record::value::map::Indexed
• header::record::value::map::Inner
• header::record::value::map::Typed
• variant::io::Read
• variant::io::Write
• variant::record::AlternateBases
• variant::record::Filters
• variant::record::Ids
• variant::record::Record
• variant::record::ReferenceBases
• variant::record::info::Info
• variant::record::info::field::value::array::Values
• variant::record::samples::Sample
• variant::record::samples::Samples
• variant::record::samples::series::Series
• variant::record::samples::series::value::array::Values
• variant::record::samples::series::value::genotype::Genotype

Functions

• header::parser::parse_record
• index

Type Aliases

• header::AlternativeAlleles
• header::Contigs
• header::Filters
• header::Formats
• header::Infos
• header::OtherRecords
• header::SampleNames
• header::record::value::map::alternative_allele::Tag
• header::record::value::map::contig::Tag
• header::record::value::map::filter::Tag
• header::record::value::map::format::Tag
• header::record::value::map::info::Tag
• header::record::value::map::other::Tag
• header::string_maps::ContigStringMap
• header::string_maps::StringStringMap

Constants

• header::record::key::ALTERNATIVE_ALLELE
• header::record::key::CONTIG
• header::record::key::FILE_FORMAT
• header::record::key::FILTER
• header::record::key::FORMAT
• header::record::key::INFO
• variant::record::info::field::key::ADJACENT_COPY_NUMBER
• variant::record::info::field::key::ADJACENT_COPY_NUMBER_CONFIDENCE_INTERVALS
• variant::record::info::field::key::ADJACENT_READ_DEPTHS
• variant::record::info::field::key::ALLELE_COUNT
• variant::record::info::field::key::ALLELE_FREQUENCIES
• variant::record::info::field::key::ANCESTRAL_ALLELE
• variant::record::info::field::key::BASE_QUALITY
• variant::record::info::field::key::BREAKEND_CONFIDENCE_INTERVALS
• variant::record::info::field::key::BREAKEND_COPY_NUMBER
• variant::record::info::field::key::BREAKEND_EVENT_ID
• variant::record::info::field::key::BREAKPOINT_IDS
• variant::record::info::field::key::CIGAR
• variant::record::info::field::key::COPY_NUMBER_CONFIDENCE_INTERVALS
• variant::record::info::field::key::DBV_ID
• variant::record::info::field::key::DB_RIP_ID
• variant::record::info::field::key::DB_VAR_ID
• variant::record::info::field::key::END_CONFIDENCE_INTERVALS
• variant::record::info::field::key::END_POSITION
• variant::record::info::field::key::EVENT_TYPE
• variant::record::info::field::key::FORWARD_STRAND_READ_DEPTHS
• variant::record::info::field::key::IS_IMPRECISE
• variant::record::info::field::key::IS_IN_1000_GENOMES
• variant::record::info::field::key::IS_IN_DB_SNP
• variant::record::info::field::key::IS_IN_HAP_MAP_2
• variant::record::info::field::key::IS_IN_HAP_MAP_3
• variant::record::info::field::key::IS_NOVEL
• variant::record::info::field::key::IS_SOMATIC_MUTATION
• variant::record::info::field::key::IS_VALIDATED
• variant::record::info::field::key::MAPPING_QUALITY
• variant::record::info::field::key::MATE_BREAKEND_IDS
• variant::record::info::field::key::MICROHOMOLOGY_LENGTHS
• variant::record::info::field::key::MICROHOMOLOGY_SEQUENCES
• variant::record::info::field::key::MOBILE_ELEMENT_INFO
• variant::record::info::field::key::MOBILE_ELEMENT_TRANSDUCTION_INFO
• variant::record::info::field::key::PARTNER_BREAKEND_ID
• variant::record::info::field::key::POSITION_CONFIDENCE_INTERVALS
• variant::record::info::field::key::REPEAT_UNIT_BASE_COUNTS
• variant::record::info::field::key::REPEAT_UNIT_COUNTS
• variant::record::info::field::key::REPEAT_UNIT_COUNT_CONFIDENCE_INTERVALS
• variant::record::info::field::key::REPEAT_UNIT_LENGTHS
• variant::record::info::field::key::REPEAT_UNIT_SEQUENCES
• variant::record::info::field::key::REVERSE_STRAND_READ_DEPTHS
• variant::record::info::field::key::SAMPLES_WITH_DATA_COUNT
• variant::record::info::field::key::STRAND_BIAS
• variant::record::info::field::key::SV_CLAIM
• variant::record::info::field::key::SV_LENGTHS
• variant::record::info::field::key::SV_TYPE
• variant::record::info::field::key::TOTAL_ALLELE_COUNT
• variant::record::info::field::key::TOTAL_DEPTH
• variant::record::info::field::key::TOTAL_READ_DEPTHS
• variant::record::info::field::key::TOTAL_REPEAT_SEQUENCE_BASE_COUNTS
• variant::record::info::field::key::TOTAL_REPEAT_SEQUENCE_BASE_COUNT_CONFIDENCE_INTERVALS
• variant::record::info::field::key::TOTAL_REPEAT_SEQUENCE_COUNTS
• variant::record::info::field::key::ZERO_MAPPING_QUALITY_COUNT
• variant::record::samples::keys::key::ANCESTRAL_HAPLOTYPE_ID
• variant::record::samples::keys::key::CONDITIONAL_GENOTYPE_QUALITY
• variant::record::samples::keys::key::COPY_NUMBER_CONFIDENCE_INTERVAL
• variant::record::samples::keys::key::EXPECTED_ALTERNATE_ALLELE_COUNTS
• variant::record::samples::keys::key::FILTER
• variant::record::samples::keys::key::FORWARD_STRAND_READ_DEPTHS
• variant::record::samples::keys::key::GENOTYPE
• variant::record::samples::keys::key::GENOTYPE_COPY_NUMBER
• variant::record::samples::keys::key::GENOTYPE_COPY_NUMBER_LIKELIHOODS
• variant::record::samples::keys::key::GENOTYPE_COPY_NUMBER_POSTERIOR_PROBABILITIES
• variant::record::samples::keys::key::GENOTYPE_COPY_NUMBER_QUALITY
• variant::record::samples::keys::key::GENOTYPE_LIKELIHOODS
• variant::record::samples::keys::key::GENOTYPE_POSTERIOR_PROBABILITIES
• variant::record::samples::keys::key::HAPLOTYPE_ID
• variant::record::samples::keys::key::HAPLOTYPE_QUALITY
• variant::record::samples::keys::key::LENGTH
• variant::record::samples::keys::key::LOCAL_ALTERNATIVE_ALLELE
• variant::record::samples::keys::key::LOCAL_EXPECTED_ALTERNATE_ALLELE_COUNTS
• variant::record::samples::keys::key::LOCAL_FORWARD_STRAND_READ_DEPTHS
• variant::record::samples::keys::key::LOCAL_GENOTYPE_LIKELIHOODS
• variant::record::samples::keys::key::LOCAL_GENOTYPE_POSTERIOR_PROBABILITIES
• variant::record::samples::keys::key::LOCAL_READ_DEPTHS
• variant::record::samples::keys::key::LOCAL_REVERSE_STRAND_READ_DEPTHS
• variant::record::samples::keys::key::LOCAL_ROUNDED_GENOTYPE_LIKELIHOODS
• variant::record::samples::keys::key::LOCAL_ROUNDED_GENOTYPE_POSTERIOR_PROBABILITIES
• variant::record::samples::keys::key::MAPPING_QUALITY
• variant::record::samples::keys::key::NOVEL_VARIANT_QUALITY_SCORE
• variant::record::samples::keys::key::PHASE_SET
• variant::record::samples::keys::key::PHASE_SET_LIST
• variant::record::samples::keys::key::PHASE_SET_LIST_ORDINALS
• variant::record::samples::keys::key::PHASE_SET_LIST_QUALITIES
• variant::record::samples::keys::key::PHASING_QUALITY
• variant::record::samples::keys::key::READ_DEPTH
• variant::record::samples::keys::key::READ_DEPTHS
• variant::record::samples::keys::key::RESERVED_LA
• variant::record::samples::keys::key::REVERSE_STRAND_READ_DEPTHS
• variant::record::samples::keys::key::ROUNDED_GENOTYPE_LIKELIHOODS
• variant::record::samples::keys::key::ROUNDED_GENOTYPE_POSTERIOR_PROBABILITIES